CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HelroG108893
(
Helobdella robusta
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
HelroG108893
T305555_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hr39
M03942_2.00
Drosophila melanogaster
CAAGGHCRN
NYGDCCTTG
SELEX
Nitta et al.(2015)
Hr39_1
0.885
0.514
Hr39
M03943_2.00
Drosophila melanogaster
CAAGGYCRH
DYGRCCTTG
SELEX
Nitta et al.(2015)
Hr39_2
0.885
0.514
NR1H3
M09264_2.00
Homo sapiens
NHRRGGBHABHNNRGGNCA
TGNCCYNNDVTDVCCYYDN
Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B
0.883
0.657
Nr1h3
M09301_2.00
Mus musculus
VDGDNCARAGKBCAN
NTGVMCTYTGNHCHB
Misc
Kulakovskiy et al.(2013)
NR1H3_MOUSE.H11MO.0.A
0.867
0.643
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.847
0.671
Nr1h2
M09620_2.00
Mus musculus
RGGTYACTNNAGGTCA
TGACCTNNAGTRACCY
Misc
Heinz et al.(2010)
RAW-LXRb.biotin_GSE21512
0.842
0.629
nr1h5.S
M11194_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.839
0.729
NR5A1
M05613_2.00
Homo sapiens
NNCAAGGYCRN
NYGRCCTTGNN
SELEX
Yin et al.(2017)
NR5A1_FL_HT-SELEX
0.833
0.514
Nr5a1
M09322_2.00
Mus musculus
NBYCAAGGYCA
TGRCCTTGRVN
Misc
Kulakovskiy et al.(2013)
STF1_MOUSE.H11MO.0.B
0.833
0.514
NR5A1
M11142_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SF1_Q5_01
0.833
0.514
NR5A1
M11143_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SF1_Q5
0.833
0.514
NR5A1
M11144_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SF1_Q6_01
0.833
0.514
NR5A1
M11145_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SF1_Q6
0.833
0.514
NR5A1
M05614_2.00
Homo sapiens
NNSAAGGHCRN
NYGDCCTTSNN
SELEX
Yin et al.(2017)
NR5A1_FL_Methyl-HT-SELEX
0.833
0.514
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.825
0.543
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH
DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.825
0.543
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.825
0.543
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN
NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.825
0.543
Nr5a2
M00816_2.00
Mus musculus
VAAGGTCR
YGACCTTB
PBM
Weirauch et al.(2013)
pTH3468
0.819
0.500
Nr5a2
M08158_2.00
Mus musculus
VRDBTCAAGGYCANN
NNTGRCCTTGAVHYB
ChIP-seq
Mathelier et al.(2014)
MA0505.1
0.819
0.500
Nr5a2
M09320_2.00
Mus musculus
NBYCAAGGYCA
TGRCCTTGRVN
Misc
Kulakovskiy et al.(2013)
NR5A2_MOUSE.H11MO.0.A
0.819
0.500
Nr5a2
M09616_2.00
Mus musculus
BYCAAGGYCA
TGRCCTTGRV
Misc
Heinz et al.(2010)
Pancreas-LRH1_GSE34295
0.819
0.500
Nr5a2
M09615_2.00
Mus musculus
BYCAAGGYCA
TGRCCTTGRV
Misc
Heinz et al.(2010)
mES-Nr5a2_GSE19019
0.819
0.500
Nr2f6
M00811_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH2193
0.811
0.543
Nr2f6
M03419_2.00
Mus musculus
RAGGTCAADAGGTCA
TGACCTHTTGACCTY
SELEX
Jolma et al.(2013)
Nr2f6_1
0.811
0.543
Nr2f6
M03420_2.00
Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Nr2f6_2
0.811
0.543
THRB
M03379_2.00
Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_1
0.804
0.600
THRB
M03380_2.00
Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_2
0.804
0.600
THRB
M03381_2.00
Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN
SELEX
Jolma et al.(2013)
THRB_3
0.804
0.600
THRB
M05629_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1
0.804
0.600
THRB
M05630_2.00
Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2
0.804
0.600
THRB
M05633_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1
0.804
0.600
THRB
M05634_2.00
Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2
0.804
0.600
THRB
M09285_2.00
Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB
Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C
0.804
0.600
THRB
M11150_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01
0.804
0.600
THRB
M05631_2.00
Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1
0.804
0.600
THRB
M05632_2.00
Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2
0.804
0.600
THRB
M05635_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1
0.804
0.600
THRB
M05636_2.00
Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2
0.804
0.600
GAG_AVIER
M11193_2.00
Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB
Transfac
Matys et al.(2006)
V$T3R_01
0.800
0.557
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.798
0.543
NR5A2
M05589_2.00
Homo sapiens
YCAAGGYCRYGRCCTTSR
YSAAGGYCRYGRCCTTGR
SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_1
0.797
0.486
NR5A2
M05590_2.00
Homo sapiens
NYCAAGGTCAH
DTGACCTTGRN
SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_2
0.797
0.486
NR5A2
M05591_2.00
Homo sapiens
YGRCCTTSVNYSAAGGYCR
YGRCCTTSRNBSAAGGYCR
SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_3
0.797
0.486
NR5A2
M09271_2.00
Homo sapiens
NBYCAAGGYCA
TGRCCTTGRVN
Misc
Kulakovskiy et al.(2013)
NR5A2_HUMAN.H11MO.0.B
0.797
0.486
NR5A2
M11126_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LRH1_Q5_01
0.797
0.486
NR5A2
M11127_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LRH1_Q5
0.797
0.486
NR5A2
M11128_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LRH1_Q6
0.797
0.486
NR5A2
M05592_2.00
Homo sapiens
YCAAGGYCRYGACCTTSR
YSAAGGTCRYGRCCTTGR
SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_1
0.797
0.486
NR5A2
M05593_2.00
Homo sapiens
NYCAAGGTCRH
DYGACCTTGRN
SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_2
0.797
0.486
NR5A2
M05594_2.00
Homo sapiens
YGRCCTTSVNBSAAGGYCR
YGRCCTTSVNBSAAGGYCR
SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_3
0.797
0.486
ftz-f1
M02407_2.00
Drosophila melanogaster
RRGGTCAH
DTGACCYY
PBM
Weirauch et al.(2014)
pTH5709
0.787
0.500
ftz-f1
M06417_2.00
Drosophila melanogaster
MMRKYYSAAGGWCRCYGM
KCRGYGWCCTTSRRMYKK
B1H
Zhu et al.(2011)
ftz-f1_FlyReg_FBgn0001078
0.787
0.500
ftz-f1
M06418_2.00
Drosophila melanogaster
AAGGTCA
TGACCTT
B1H
Zhu et al.(2011)
ftz-f1_SANGER_5_FBgn0001078
0.787
0.500
THRA
M03368_2.00
Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH
SELEX
Jolma et al.(2013)
THRA_1
0.786
0.571
THRA
M09275_2.00
Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY
Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C
0.786
0.571
Thra
M09333_2.00
Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB
Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C
0.786
0.571
Thra
M09619_2.00
Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC
Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347
0.786
0.571
THRA
M11135_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RALPHA_Q6
0.786
0.571
nhr-25
M08226_2.00
Caenorhabditis elegans
MAAGGTCA
TGACCTTK
ChIP-seq
Contrino et al.(2012)
Mw160
0.784
0.471
NR1H4
M00368_2.00
Homo sapiens
NVRGGTCANN
NNTGACCYBN
PBM
Barrera et al.(2016)
NR1H4_REF
0.774
0.671
NR1H4
M05876_2.00
Homo sapiens
DRGKTCAHHKD
HMDDTGAMCYH
SMiLE-seq
Isakova et al.(2017)
NR1H4
0.774
0.671
NR1H4
M08152_2.00
Homo sapiens
NNGGTCATTNN
NNAATGACCNN
ChIP-seq
Mathelier et al.(2014)
MA1110.1
0.774
0.671
NR1H4
M09263_2.00
Homo sapiens
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
0.774
0.671
Nr1h4
M09332_2.00
Mus musculus
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
0.774
0.671
Nr1h4
M09618_2.00
Mus musculus
NRGGBCANTGVCCY
RGGBCANTGVCCYN
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
0.774
0.671
NR1H4
M11086_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q2
0.774
0.671
NR1H4
M11087_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q3
0.774
0.671
NR1H4
M11088_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q5
0.774
0.671
NR1H4
M11089_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
0.774
0.671
NR1H4
M00367_2.00
Homo sapiens
NNNTWTTATDHNN
NNDHATAAWANNN
PBM
Barrera et al.(2016)
NR1H4_C144R
0.774
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HelroP108893
Nuclear receptor
44
113
DLCVICGDKASGYHYNTLSCEGCKGFFRRTITRKLHYQCKYGGDCEMDMWMRRKCPACRLKRCKQVGMRE
Links
Other
Nuclear receptor
family TFs
Other
Helobdella robusta
TFs
859 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy