CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Nr1i3
(
Mus musculus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSMUSG00000005677
T303902_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.985
0.886
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH
DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.985
0.886
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.985
0.886
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN
NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.985
0.886
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.874
0.657
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.842
0.600
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.842
0.600
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.842
0.600
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.842
0.600
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.842
0.600
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.842
0.600
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.842
0.600
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.842
0.600
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.842
0.600
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.810
0.586
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000005820
Nuclear receptor
19
88
RNCVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPICPFAGRCEVSKAQRRHCPACRLQKCLNVGMRK
ENSMUSP00000074915
Nuclear receptor
19
88
RNCVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPICPFAGRCEVSKAQRRHCPACRLQKCLNVGMRK
ENSMUSP00000106960
Nuclear receptor
19
88
RNCVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPICPFAGRCEVSKAQRRHCPACRLQKCLNVGMRK
ENSMUSP00000137852
Nuclear receptor
19
64
RNCVVCGDRATGYHFHALTCEGCKGFFSDTVSRSPGIAASQTGTAA
Links
Other
Nuclear receptor
family TFs
Other
Mus musculus
TFs
133 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Nr1i3
Rattus norvegicus
ENSRNOG00000003260
I
0.994
ENSDORG00000001701
Dipodomys ordii
ENSDORG00000001701
I
0.992
NR1I3
Otolemur garnettii
ENSOGAG00000013738
I
0.992
NR1I3
Procavia capensis
ENSPCAG00000013933
I
0.988
NR1I3
Canis familiaris
ENSCAFG00000012921
I
0.988
NR1I3
Loxodonta africana
ENSLAFG00000001180
I
0.988
NR1I3
Callithrix jacchus
ENSCJAG00000004783
I
0.987
NR1I3
Oryctolagus cuniculus
ENSOCUG00000013537
I
0.986
NR1I3
Equus caballus
ENSECAG00000020930
I
0.986
ENSMPUG00000014388
Mustela putorius furo
ENSMPUG00000014388
I
0.986
ENSPANG00000014194
Papio anubis
ENSPANG00000014194
I
0.985
ENSNLEG00000014287
Nomascus leucogenys
ENSNLEG00000014287
I
0.985
NR1I3
Dasypus novemcinctus
ENSDNOG00000045179
I
0.985
NR1I3
Homo sapiens
ENSG00000143257
D
0.985
ENSCSAG00000002676
Chlorocebus sabaeus
ENSCSAG00000002676
I
0.985
ENSSHAG00000016687
Sarcophilus harrisii
ENSSHAG00000016687
I
0.985
NR1I3
Pan troglodytes
ENSPTRG00000001582
I
0.985
NR1I3
Macaca mulatta
ENSMMUG00000018128
I
0.985
ENSP00000356959
Macaca fascicularis
ENSP00000356959
I
0.985
NR1I3
Felis catus
ENSFCAG00000000497
I
0.984
ENSMEUG00000001987
Macropus eugenii
ENSMEUG00000001987
I
0.984
NR1I3
Sus scrofa
ENSSSCG00000006353
I
0.983
NR1I3
Monodelphis domestica
ENSMODG00000005089
I
0.983
NR1I3
Gorilla gorilla
ENSGGOG00000005724
I
0.983
NR1I3
Erinaceus europaeus
ENSEEUG00000004981
I
0.983
ENSP00000356959-D1
Bos grunniens
ENSP00000356959-D1
I
0.983
NR1I3
Bos taurus
ENSBTAG00000009215
I
0.983
NR1I3
Pteropus vampyrus
ENSPVAG00000005540
I
0.983
NR1I3
Ochotona princeps
ENSOPRG00000003455
I
0.982
NR1I3
Sorex araneus
ENSSARG00000002684
I
0.979
NR1I3
Cavia porcellus
ENSCPOG00000015331
I
0.978
ENSTSYG00000003712
Tarsius syrichta
ENSTSYG00000003712
I
0.976
ENSSTOG00000003818
Ictidomys tridecemlineatus
ENSSTOG00000003818
I
0.975
ENSAMEG00000015383
Ailuropoda melanoleuca
ENSAMEG00000015383
I
0.971
ENSOARG00000009965
Ovis aries
ENSOARG00000009965
I
0.970
Ogr03312
Ophisaurus gracilis
Ogr03312
I
0.930
Cmyd_10001928
Chelonia mydas
Cmyd_10001928
I
0.921
ENSPSIG00000004437
Pelodiscus sinensis
ENSPSIG00000004437
I
0.920
Pvit_09404
Pogona vitticeps
Pvit_09404
I
0.911
Pvit_09406
Pogona vitticeps
Pvit_09406
I
0.911
ENSACAG00000001535
Anolis carolinensis
ENSACAG00000001535
I
0.894
Alligator_sinensis_CCG006068.1
Alligator sinensis
Alligator_sinensis_CCG006068.1
I
0.881
Q9DFH3_CHICK
Gallus gallus
Q9DFH3_CHICK
I
0.874
ENSGALG00000028624
Gallus gallus
ENSGALG00000028624
D
0.874
nr1i2.L
Xenopus laevis
XB-GENE-17336519
I
0.873
nr1i2.S
Xenopus laevis
XB-GENE-865343
I
0.865
NR1I3
Tursiops truncatus
ENSTTRG00000009227
I
0.848
Gfo_R005027
Geospiza fortis
Gfo_R005027
I
0.846
Aan_R009572
Calypte anna
Aan_R009572
I
0.845
VDR
Taeniopygia guttata
ENSTGUG00000017093
I
0.845
ENSGALG00000026166
Gallus gallus
ENSGALG00000026166
I
0.845
VDR
Meleagris gallopavo
ENSMGAG00000004846
I
0.845
ENSPANG00000011327
Papio anubis
ENSPANG00000011327
I
0.842
VDR
Tupaia belangeri
ENSTBEG00000005717
I
0.842
VDR
Tursiops truncatus
ENSTTRG00000012578
I
0.842
ENSMMUP00000008847
Macaca fascicularis
ENSMMUP00000008847
I
0.842
ENSP00000229022-D1
Bos grunniens
ENSP00000229022-D1
I
0.842
Myotis_brandtii_VDR_10022134
Myotis brandtii
Myotis_brandtii_VDR_10022134
I
0.842
VDR
Oryctolagus cuniculus
ENSOCUG00000027507
I
0.842
ENSSTOG00000026741
Ictidomys tridecemlineatus
ENSSTOG00000026741
I
0.842
VDR
Pteropus vampyrus
ENSPVAG00000011085
I
0.842
Vdr
Rattus norvegicus
ENSRNOG00000054420
I
0.842
VDR
Sus scrofa
ENSSSCG00000020864
I
0.842
ENSPPYG00000004448
Pongo abelii
ENSPPYG00000004448
I
0.842
VDR
Otolemur garnettii
ENSOGAG00000005480
I
0.842
ENSCPOG00000006025
Cavia porcellus
ENSCPOG00000006025
I
0.842
ENSCSAG00000006576
Chlorocebus sabaeus
ENSCSAG00000006576
I
0.842
ENSMEUG00000014791
Macropus eugenii
ENSMEUG00000014791
I
0.842
VDR
Callithrix jacchus
ENSCJAG00000015018
I
0.842
ENSCHOG00000008514
Choloepus hoffmanni
ENSCHOG00000008514
I
0.842
VDR
Homo sapiens
ENSG00000111424
D
0.842
VDR
Loxodonta africana
ENSLAFG00000006418
I
0.842
VDR
Dasypus novemcinctus
ENSDNOG00000039161
I
0.842
VDR
Erinaceus europaeus
ENSEEUG00000011116
I
0.842
VDR
Felis catus
ENSFCAG00000024594
I
0.842
ENSOARG00000019372
Ovis aries
ENSOARG00000019372
I
0.842
VDR
Gorilla gorilla
ENSGGOG00000016473
I
0.842
VDR
Equus caballus
ENSECAG00000015822
I
0.842
VDR
Myotis lucifugus
ENSMLUG00000000912
I
0.842
VDR
Microcebus murinus
ENSMICG00000009017
I
0.842
ENSMODG00000028774
Monodelphis domestica
ENSMODG00000028774
I
0.842
ENSMPUG00000000419
Mustela putorius furo
ENSMPUG00000000419
I
0.842
VDR
Bos taurus
ENSBTAG00000016414
I
0.842
Vdr
Mus musculus
ENSMUSG00000022479
D
0.842
VDR
Macaca mulatta
ENSMMUG00000006727
I
0.842
ENSAMEG00000013706
Ailuropoda melanoleuca
ENSAMEG00000013706
I
0.842
ENSNLEG00000017900
Nomascus leucogenys
ENSNLEG00000017900
I
0.842
VDR
Canis familiaris
ENSCAFG00000009103
I
0.842
NR1I2
Otolemur garnettii
ENSOGAG00000006017
I
0.838
NR1I2
Canis familiaris
ENSCAFG00000011094
I
0.836
Afo_R013462
Aptenodytes forsteri
Afo_R013462
I
0.833
ENSPMAG00000003695
Petromyzon marinus
ENSPMAG00000003695
I
0.829
ENSSHAG00000004437
Sarcophilus harrisii
ENSSHAG00000004437
I
0.820
NR1I2
Sus scrofa
ENSSSCG00000011890
I
0.818
NR1I2
Bos taurus
ENSBTAG00000019557
I
0.818
ENSP00000336528-D1
Bos grunniens
ENSP00000336528-D1
I
0.818
ENSPMAG00000000180
Petromyzon marinus
ENSPMAG00000000180
D
0.810
ENSXMAG00000004608
Xiphophorus maculatus
ENSXMAG00000004608
I
0.808
ENSXMAG00000018707
Xiphophorus maculatus
ENSXMAG00000018707
I
0.808
ENSAMXG00000019854
Astyanax mexicanus
ENSAMXG00000019854
I
0.808
vdrb
Danio rerio
ENSDARG00000070721
I
0.808
ENSAMXG00000012991
Astyanax mexicanus
ENSAMXG00000012991
I
0.808
vdra
Gasterosteus aculeatus
ENSGACG00000004763
I
0.808
ENSGMOG00000012720
Gadus morhua
ENSGMOG00000012720
I
0.808
ENSGMOG00000019451
Gadus morhua
ENSGMOG00000019451
I
0.808
ENSPFOG00000014233
Poecilia formosa
ENSPFOG00000014233
I
0.808
vdralpha
Oryzias latipes
ENSORLG00000001063
I
0.808
ENSPFOG00000001655
Poecilia formosa
ENSPFOG00000001655
I
0.808
vdr
Oryzias latipes
ENSORLG00000016402
I
0.808
vdra
Takifugu rubripes
ENSTRUG00000011907
I
0.808
vdrb
Takifugu rubripes
ENSTRUG00000011576
I
0.808
vdrb
Tetraodon nigroviridis
ENSTNIG00000007031
I
0.808
vdrb
Gasterosteus aculeatus
ENSGACG00000007975
I
0.808
ENSONIG00000009200
Oreochromis niloticus
ENSONIG00000009200
I
0.808
ENSONIG00000019378
Oreochromis niloticus
ENSONIG00000019378
I
0.802
ENSLOCG00000005194
Lepisosteus oculatus
ENSLOCG00000005194
I
0.802
ENSLACG00000019104
Latimeria chalumnae
ENSLACG00000019104
I
0.799
HelroG108893
Helobdella robusta
HelroG108893
I
0.798
VDR
Anolis carolinensis
ENSACAG00000013485
I
0.798
Pvit_07440
Pogona vitticeps
Pvit_07440
I
0.798
ENSMEUG00000000113
Macropus eugenii
ENSMEUG00000000113
I
0.797
Cmyd_10006875
Chelonia mydas
Cmyd_10006875
I
0.784
ENSPSIG00000018108
Pelodiscus sinensis
ENSPSIG00000018108
I
0.784
NEMVEDRAFT_v1g165424
Nematostella vectensis
NEMVEDRAFT_v1g165424
I
0.780
ENSTSYG00000003990
Tarsius syrichta
ENSTSYG00000003990
I
0.768
ENSLACG00000010334
Latimeria chalumnae
ENSLACG00000010334
I
0.768
NR5A1
Meleagris gallopavo
ENSMGAG00000008342
I
0.765
NR6A1
Pan troglodytes
ENSPTRG00000021357
I
0.764
vdr.S
Xenopus laevis
XB-GENE-864847
I
0.764
vdr
Xenopus tropicalis
XB-GENE-486505
I
0.764
NR1I2
Myotis lucifugus
ENSMLUG00000002877
I
0.749
Myotis_brandtii_NR1I2_10031787
Myotis brandtii
Myotis_brandtii_NR1I2_10031787
I
0.749