Alligator_sinensis_CCG005392.1 (Alligator sinensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Alligator_sinensis_CCG005392.1 T306523_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.959 0.794
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.949 0.868
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.949 0.868
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.949 0.868
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.949 0.868
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.949 0.868
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.949 0.868
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.949 0.868
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.949 0.868
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.949 0.868
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.874 0.662
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.874 0.662
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.874 0.662
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.874 0.662
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.773 0.618
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005392.1 Nuclear receptor 23 90

Links

Other Nuclear receptor family TFs
Other Alligator sinensis TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NR1I2 Homo sapiens ENSG00000144852 D 0.874
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.959
VDR Homo sapiens ENSG00000111424 D 0.949
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.773
Vdr Mus musculus ENSMUSG00000022479 D 0.949
VDR Sus scrofa ENSSSCG00000020864 I 0.949
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.966
VDR Tupaia belangeri ENSTBEG00000005717 I 0.949
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.874
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.814
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.949
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.949
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.949
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.854
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.824
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.949
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.874
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.959
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.959
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.746
vdralpha Oryzias latipes ENSORLG00000001063 I 0.959
vdr Oryzias latipes ENSORLG00000016402 I 0.959
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.949
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.752
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.959
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.959
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.932
VDR Otolemur garnettii ENSOGAG00000005480 I 0.949
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.874
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.951
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.949
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.949
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.854
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.874
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.950
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.874
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.949
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.964
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.852
vdr Xenopus tropicalis XB-GENE-486505 I 0.953
vdr.S Xenopus laevis XB-GENE-864847 I 0.956
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.966
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.824
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.811
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.897
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.959
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.959
vdra Takifugu rubripes ENSTRUG00000011907 I 0.959
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.952
VDR Tursiops truncatus ENSTTRG00000012578 I 0.949
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.959
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.959
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.773
Aan_R009572 Calypte anna Aan_R009572 I 0.951
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.954
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.854
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.949
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.794
VDR Callithrix jacchus ENSCJAG00000015018 I 0.949
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.949
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.949
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.826
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.827
nr1i2 Danio rerio ENSDARG00000029766 I 0.857
vdrb Danio rerio ENSDARG00000070721 I 0.959
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.949
NR1I2 Equus caballus ENSECAG00000008728 I 0.874
VDR Equus caballus ENSECAG00000015822 I 0.949
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.949
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.874
vdr-a Ciona intestinalis ENSCING00000020740 I 0.902
VDR Anolis carolinensis ENSACAG00000013485 I 0.964
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.854
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.949
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.857
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.959
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.959
VDR Bos taurus ENSBTAG00000016414 I 0.949
NR1I2 Bos taurus ENSBTAG00000019557 I 0.856
VDR Canis familiaris ENSCAFG00000009103 I 0.949
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.752
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.949
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.874
NR1I2 Felis catus ENSFCAG00000006092 I 0.854
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.951
VDR Microcebus murinus ENSMICG00000009017 I 0.949
VDR Myotis lucifugus ENSMLUG00000000912 I 0.949
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.874
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.874
VDR Macaca mulatta ENSMMUG00000006727 I 0.949
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.949
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.949
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.874
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.949
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.949
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.949
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.959
VDR Felis catus ENSFCAG00000024594 I 0.949
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.959
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.959
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.951
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.874
VDR Gorilla gorilla ENSGGOG00000016473 I 0.949
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.959
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.959
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.884
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.961
VDR Loxodonta africana ENSLAFG00000006418 I 0.949
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.746