CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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D917_06071
(
Trichinella nativa
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
D917_06071
T312580_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.814
0.814
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.814
0.814
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.814
0.814
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.814
0.814
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.814
0.814
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.814
0.814
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.814
0.814
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.814
0.814
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.794
0.794
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.794
0.794
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.794
0.794
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.706
0.706
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.706
0.706
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_06071
Paired box
1
102
MRIVELAQMGIRPCDISRELRVSHGCVSKILNRFQETGSVLPGAIGGSKPRVTTPRVVDHIRLLKLQDPAMFAWEIRDRLVADGVCDKTSAPSVSSISRILR
Links
Other
Paired box
family TFs
Other
Trichinella nativa
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TMUE_s0003015350
Trichuris muris
TMUE_s0003015350
I
0.873
HHAL005838-PA
Halyomorpha halys
HHAL005838-PA
I
0.824
CLEC012019
Cimex lectularius
CLEC012019
I
0.824
ENSOARG00000008050
Ovis aries
ENSOARG00000008050
I
0.814
PAX1
Oryctolagus cuniculus
ENSOCUG00000003276
I
0.814
PAX9
Oryctolagus cuniculus
ENSOCUG00000014321
I
0.814
ENSOARG00000004951
Ovis aries
ENSOARG00000004951
I
0.814
PAX9
Ornithorhynchus anatinus
ENSOANG00000014065
I
0.814
ENSNLEG00000010049
Nomascus leucogenys
ENSNLEG00000010049
I
0.814
ENSOGAG00000013131
Otolemur garnettii
ENSOGAG00000013131
I
0.814
PAX1
Ornithorhynchus anatinus
ENSOANG00000002008
I
0.814
ENSONIG00000000990
Oreochromis niloticus
ENSONIG00000000990
I
0.814
PAX1
Procavia capensis
ENSPCAG00000003556
I
0.814
ENSPFOG00000017550
Poecilia formosa
ENSPFOG00000017550
I
0.814
ENSPANG00000008282
Papio anubis
ENSPANG00000008282
I
0.814
ENSPANG00000000932
Papio anubis
ENSPANG00000000932
I
0.814
ENSNLEG00000003346
Nomascus leucogenys
ENSNLEG00000003346
I
0.814
PAX1
Ochotona princeps
ENSOPRG00000017249
I
0.814
PAX1
Otolemur garnettii
ENSOGAG00000033162
I
0.814
ENSMPUG00000016259
Mustela putorius furo
ENSMPUG00000016259
I
0.814
PAX9
Meleagris gallopavo
ENSMGAG00000012530
I
0.814
PAX9
Microcebus murinus
ENSMICG00000010808
I
0.814
PAX9
Myotis lucifugus
ENSMLUG00000011407
I
0.814
ENSMEUG00000010140
Macropus eugenii
ENSMEUG00000010140
I
0.814
ENSMEUG00000002095
Macropus eugenii
ENSMEUG00000002095
I
0.814
PAX9
Loxodonta africana
ENSLAFG00000017541
I
0.814
ENSLOCG00000013992
Lepisosteus oculatus
ENSLOCG00000013992
I
0.814
PAX1
Myotis lucifugus
ENSMLUG00000014710
I
0.814
PAX9
Macaca mulatta
ENSMMUG00000009648
I
0.814
ENSPMAG00000010308
Petromyzon marinus
ENSPMAG00000010308
I
0.814
Pax9
Mus musculus
ENSMUSG00000001497
I
0.814
ENSMPUG00000001187
Mustela putorius furo
ENSMPUG00000001187
I
0.814
PAX9
Monodelphis domestica
ENSMODG00000012681
I
0.814
PAX1
Macaca mulatta
ENSMMUG00000019409
I
0.814
PAX1
Monodelphis domestica
ENSMODG00000006198
I
0.814
Pax1
Mus musculus
ENSMUSG00000037034
I
0.814
ENSPPYG00000010758
Pongo abelii
ENSPPYG00000010758
I
0.814
Aan_R005718
Calypte anna
Aan_R005718
I
0.814
Afo_R004464
Aptenodytes forsteri
Afo_R004464
I
0.814
Alligator_sinensis_CCG004503.1
Alligator sinensis
Alligator_sinensis_CCG004503.1
I
0.814
ENSXMAG00000015762
Xiphophorus maculatus
ENSXMAG00000015762
I
0.814
PAX1
Tursiops truncatus
ENSTTRG00000002444
I
0.814
pax9
Tetraodon nigroviridis
ENSTNIG00000019284
I
0.814
pax9
Takifugu rubripes
ENSTRUG00000011965
I
0.814
ENSBTAP00000008861-D1
Bos grunniens
ENSBTAP00000008861-D1
I
0.814
ENSP00000355245
Macaca fascicularis
ENSP00000355245
I
0.814
pax9
Xenopus tropicalis
XB-GENE-482238
I
0.814
pax9.L
Xenopus laevis
XB-GENE-864845
I
0.814
Pvit_17942
Pogona vitticeps
Pvit_17942
I
0.814
Ogr19508
Ophisaurus gracilis
Ogr19508
I
0.814
ENSP00000381499
Macaca fascicularis
ENSP00000381499
I
0.814
ENSP00000384817-D1
Bos grunniens
ENSP00000384817-D1
I
0.814
ENSTNIG00000002104
Tetraodon nigroviridis
ENSTNIG00000002104
I
0.814
PAX9
Taeniopygia guttata
ENSTGUG00000012015
I
0.814
Pax9
Rattus norvegicus
ENSRNOG00000008826
I
0.814
PAX9
Sorex araneus
ENSSARG00000000337
I
0.814
PAX1
Pan troglodytes
ENSPTRG00000013311
I
0.814
PAX9
Pan troglodytes
ENSPTRG00000006281
I
0.814
ENSLACG00000015921
Latimeria chalumnae
ENSLACG00000015921
I
0.814
ENSPSIG00000010961
Pelodiscus sinensis
ENSPSIG00000010961
I
0.814
ENSSHAG00000005531
Sarcophilus harrisii
ENSSHAG00000005531
I
0.814
ENSSHAG00000017556
Sarcophilus harrisii
ENSSHAG00000017556
I
0.814
PAX9
Tupaia belangeri
ENSTBEG00000002460
I
0.814
ENSTGUG00000007526
Taeniopygia guttata
ENSTGUG00000007526
I
0.814
ENSSTOG00000015730
Ictidomys tridecemlineatus
ENSSTOG00000015730
I
0.814
ENSSTOG00000003000
Ictidomys tridecemlineatus
ENSSTOG00000003000
I
0.814
ENSSSCG00000001943
Sus scrofa
ENSSSCG00000001943
I
0.814
PAX1
Sus scrofa
ENSSSCG00000007112
I
0.814
ENSPPYG00000005755
Pongo abelii
ENSPPYG00000005755
I
0.814
PAX1
Pteropus vampyrus
ENSPVAG00000002604
I
0.814
ENSAMEG00000002906
Ailuropoda melanoleuca
ENSAMEG00000002906
I
0.814
ENSAMEG00000012642
Ailuropoda melanoleuca
ENSAMEG00000012642
I
0.814
PAX9
Dasypus novemcinctus
ENSDNOG00000000352
I
0.814
ACYPI005583
Acyrthosiphon pisum
ACYPI005583
I
0.814
PAX1
Dasypus novemcinctus
ENSDNOG00000033546
I
0.814
Pax1
Dipodomys ordii
ENSDORG00000016051
I
0.814
ENSFALG00000006155
Ficedula albicollis
ENSFALG00000006155
I
0.814
PAX9
Echinops telfairi
ENSETEG00000002086
I
0.814
PAX9
Callithrix jacchus
ENSCJAG00000016460
I
0.814
PAX9
Equus caballus
ENSECAG00000023712
I
0.814
ENSAMXG00000002161
Astyanax mexicanus
ENSAMXG00000002161
I
0.814
pax9
Danio rerio
ENSDARG00000053829
D
0.814
ENSCSAG00000011068
Chlorocebus sabaeus
ENSCSAG00000011068
I
0.814
PAX9
Cavia porcellus
ENSCPOG00000010951
I
0.814
PAX1
Callithrix jacchus
ENSCJAG00000005773
I
0.814
PAX1
Cavia porcellus
ENSCPOG00000002886
I
0.814
ENSCSAG00000015463
Chlorocebus sabaeus
ENSCSAG00000015463
I
0.814
PAX9
Canis familiaris
ENSCAFG00000013690
I
0.814
ENSAPLG00000012856
Anas platyrhynchos
ENSAPLG00000012856
I
0.814
PAX1
Bos taurus
ENSBTAG00000006742
I
0.814
PAX9
Bos taurus
ENSBTAG00000009186
I
0.814
PAX1
Canis familiaris
ENSCAFG00000005170
I
0.814
PAX9
Felis catus
ENSFCAG00000001024
I
0.814
PAX1
Erinaceus europaeus
ENSEEUG00000007846
I
0.814
PAX1
Gorilla gorilla
ENSGGOG00000016075
I
0.814
PAX1
Felis catus
ENSFCAG00000004293
I
0.814
ENSGALG00000028576
Gallus gallus
ENSGALG00000028576
I
0.814
ENSACAG00000001481
Anolis carolinensis
ENSACAG00000001481
I
0.814
ENSACAG00000010563
Anolis carolinensis
ENSACAG00000010563
I
0.814
ENSLACG00000009610
Latimeria chalumnae
ENSLACG00000009610
I
0.814
ENSGMOG00000009128
Gadus morhua
ENSGMOG00000009128
I
0.814
PAX9
Gallus gallus
ENSGALG00000010114
I
0.814
PAX9
Gorilla gorilla
ENSGGOG00000001528
I
0.814
pax9
Gasterosteus aculeatus
ENSGACG00000011298
I
0.814
PAX1
Homo sapiens
ENSG00000125813
D
0.814
PAX9
Homo sapiens
ENSG00000198807
D
0.814
AALB006349
Anopheles albimanus
AALB006349
I
0.804
SINV15629
Solenopsis invicta
SINV15629
I
0.804
PAX1
Loxodonta africana
ENSLAFG00000008908
I
0.804
ISCW011634
Ixodes scapularis
ISCW011634
I
0.804
GB52620
Apis mellifera
GB52620
I
0.804
AGAP001493
Anopheles gambiae
AGAP001493
I
0.804
KGM_09724
Danaus plexippus
KGM_09724
I
0.804
ENSXMAG00000019114
Xiphophorus maculatus
ENSXMAG00000019114
I
0.804
pax1a
Tetraodon nigroviridis
ENSTNIG00000016891
I
0.804
BGIBMGA000787
Bombyx mori
BGIBMGA000787
I
0.804
Cflo_08772--XP_001121954.1_APIME
Camponotus floridanus
Cflo_08772--XP_001121954.1_APIME
I
0.804
ADAC006866
Anopheles darlingi
ADAC006866
I
0.804
ENSAMXG00000008583
Astyanax mexicanus
ENSAMXG00000008583
I
0.804
pax1a
Takifugu rubripes
ENSTRUG00000008079
I
0.804
pax1.S
Xenopus laevis
XB-GENE-865751
I
0.804
pax1
Xenopus tropicalis
XB-GENE-487951
I
0.804
Ogr18451
Ophisaurus gracilis
Ogr18451
I
0.804
ADIR000995
Anopheles dirus
ADIR000995
I
0.804
ENSONIG00000008137
Oreochromis niloticus
ENSONIG00000008137
I
0.804
ASIS022893
Anopheles sinensis
ASIS022893
I
0.804
AQUA002471
Anopheles quadriannulatus
AQUA002471
I
0.804
AARA001070
Anopheles arabiensis
AARA001070
I
0.804
AMEM000130
Anopheles merus
AMEM000130
I
0.804
pax1a
Gasterosteus aculeatus
ENSGACG00000006987
I
0.804
ASTEI07741
Anopheles stephensi
ASTEI07741
I
0.804
ENSLOCG00000016871
Lepisosteus oculatus
ENSLOCG00000016871
I
0.804
TTRE_0000074901
Trichuris trichiura
TTRE_0000074901
I
0.804
ENSGMOG00000018913
Gadus morhua
ENSGMOG00000018913
I
0.804
PAX1
Microcebus murinus
ENSMICG00000016968
I
0.804
MDOA001030
Musca domestica
MDOA001030
I
0.804
AMEC017516
Anopheles melas
AMEC017516
I
0.804
AMIN005066
Anopheles minimus
AMIN005066
I
0.804
AFAF006072
Anopheles farauti
AFAF006072
I
0.804
AFUN001734
Anopheles funestus
AFUN001734
I
0.804
pax1
Oryzias latipes
ENSORLG00000017412
I
0.804
AEPI005638
Anopheles epiroticus
AEPI005638
I
0.804
HMEL004481
Heliconius melpomene
HMEL004481
I
0.804
AMAM000649
Anopheles maculatus
AMAM000649
I
0.804
ENSPFOG00000003208
Poecilia formosa
ENSPFOG00000003208
I
0.804
pax1b
Danio rerio
ENSDARG00000073814
I
0.804
AATE019429
Anopheles atroparvus
AATE019429
I
0.804
pax1a
Danio rerio
ENSDARG00000008203
I
0.804
ACUA000500
Anopheles culicifacies
ACUA000500
I
0.804
L889_g19368
Steinernema feltiae
L889_g19368
I
0.794
PPAI009002
Phlebotomus papatasi
PPAI009002
I
0.794
NV11293
Nasonia vitripennis
NV11293
I
0.794
SMAR007866
Strigamia maritima
SMAR007866
I
0.794
LLOJ004808
Lutzomyia longipalpis
LLOJ004808
I
0.794
ACEP27324
Atta cephalotes
ACEP27324
I
0.794
Sakowv30044183m.g
Saccoglossus kowalevskii
Sakowv30044183m.g
I
0.794
Ocbimv22010462m.g
Octopus bimaculoides
Ocbimv22010462m.g
I
0.794
LCUP007799
Lucilia cuprina
LCUP007799
I
0.794
DAPPUDRAFT_307722
Daphnia pulex
DAPPUDRAFT_307722
I
0.794
LLOJ004809
Lutzomyia longipalpis
LLOJ004809
I
0.794
GJ22751
Drosophila virilis
FBgn0209855
I
0.794
GI22750
Drosophila mojavensis
FBgn0145477
I
0.794
GL24118
Drosophila persimilis
FBgn0161708
I
0.794
GA21910
Drosophila pseudoobscura
FBgn0081895
I
0.794
GF16668
Drosophila ananassae
FBgn0093689
I
0.794
GG17455
Drosophila erecta
FBgn0109681
I
0.794
GH17421
Drosophila grimshawi
FBgn0124891
I
0.794
ENSGMOG00000017053
Gadus morhua
ENSGMOG00000017053
I
0.794
Poxm
Drosophila melanogaster
FBgn0003129
D
0.794
GK14101
Drosophila willistoni
FBgn0216107
I
0.794
GE24855
Drosophila yakuba
FBgn0241954
I
0.794
ENSAMXG00000018287
Astyanax mexicanus
ENSAMXG00000018287
I
0.794
ENSPMAG00000010414
Petromyzon marinus
ENSPMAG00000010414
I
0.794
GM26349
Drosophila sechellia
FBgn0181202
I
0.794
ENSONIG00000018717
Oreochromis niloticus
ENSONIG00000018717
I
0.784
CGI_10005222
Crassostrea gigas
CGI_10005222
I
0.784
BGLB008429
Biomphalaria glabrata
BGLB008429
I
0.784
L596_g23601
Steinernema carpocapsae
L596_g23601
I
0.784
LotgiG161614
Lottia gigantea
LotgiG161614
I
0.784
L898_g3148
Steinernema monticolum
L898_g3148
I
0.784
SPU_006683
Strongylocentrotus purpuratus
SPU_006683
I
0.784
estExt_fgenesh2_pg.C_420056
Branchiostoma floridae
estExt_fgenesh2_pg.C_420056
I
0.784
YQE_12494
Dendroctonus ponderosae
YQE_12494
I
0.775
TC008838
Tribolium castaneum
TC008838
I
0.775
L893_g11572
Steinernema glaseri
L893_g11572
I
0.775
TCNE_0001785701
Toxocara canis
TCNE_0001785701
I
0.765
ENSCING00000024971
Ciona intestinalis
ENSCING00000024971
I
0.765
ENSCSAVG00000007806
Ciona savignyi
ENSCSAVG00000007806
I
0.755
pax8
Xenopus tropicalis
XB-GENE-483693
I
0.750
MESCA000247
Megaselia scalaris
MESCA000247
I
0.747
PEQ_0000430901
Parascaris equorum
PEQ_0000430901
I
0.745
HelroG89496
Helobdella robusta
HelroG89496
I
0.745
HPLM_0000508801
Haemonchus placei
HPLM_0000508801
I
0.735
ANCCEY_02265
Ancylostoma ceylanicum
ANCCEY_02265
I
0.735
Gfo_R012945
Geospiza fortis
Gfo_R012945
I
0.735
HPBE_0001739601
Heligmosomoides bakeri
HPBE_0001739601
I
0.735
TELCIR_14257
Teladorsagia circumcincta
TELCIR_14257
I
0.735
EFV54842
Trichinella spiralis
EFV54842
I
0.726
EVEC_0000163101
Enterobius vermicularis
EVEC_0000163101
I
0.725
ACAC_0001249001
Angiostrongylus cantonensis
ACAC_0001249001
I
0.725
ASIM_0001701001
Anisakis simplex
ASIM_0001701001
I
0.725
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.716
tetur29g01000
Tetranychus urticae
tetur29g01000
I
0.716
pax2b
Gasterosteus aculeatus
ENSGACG00000002432
I
0.716
ENSONIG00000008952
Oreochromis niloticus
ENSONIG00000008952
I
0.716
ENSXMAG00000003038
Xiphophorus maculatus
ENSXMAG00000003038
I
0.716
pax5
Gasterosteus aculeatus
ENSGACG00000016112
I
0.716
RPRC009438
Rhodnius prolixus
RPRC009438
I
0.716
DICVIV_10778
Dictyocaulus viviparus
DICVIV_10778
I
0.716
LotgiG99097
Lottia gigantea
LotgiG99097
I
0.716
ENSLACG00000003762
Latimeria chalumnae
ENSLACG00000003762
I
0.716
SMUV_0000337801
Syphacia muris
SMUV_0000337801
I
0.716
SVUK_0000340101
Strongylus vulgaris
SVUK_0000340101
I
0.716
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.716
ENSAMXG00000012274
Astyanax mexicanus
ENSAMXG00000012274
I
0.716
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.716
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.716
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.716
pax5
Oryzias latipes
ENSORLG00000005326
I
0.716
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.716
pax5
Danio rerio
ENSDARG00000037383
I
0.716
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.716
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.716
ANCCAN_01783
Ancylostoma caninum
ANCCAN_01783
I
0.708
EFV60539
Trichinella spiralis
EFV60539
I
0.706
ENSTNIG00000005391
Tetraodon nigroviridis
ENSTNIG00000005391
I
0.706
nRc.2.0.1.g01878
Romanomermis culicivorax
nRc.2.0.1.g01878
I
0.706
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.706
Ocbimv22007901m.g
Octopus bimaculoides
Ocbimv22007901m.g
I
0.706
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.706
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.706
AFAF010901
Anopheles farauti
AFAF010901
I
0.706
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.706
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.706
PAX2
Homo sapiens
ENSG00000075891
D
0.706
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.706
ADIR000964
Anopheles dirus
ADIR000964
I
0.706
pax2b
Danio rerio
ENSDARG00000032578
D
0.706
pax5.L
Xenopus laevis
XB-GENE-865318
I
0.706
pax2a
Danio rerio
ENSDARG00000028148
I
0.706
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.706
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.706
AAEL002348
Aedes aegypti
AAEL002348
I
0.706