CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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lcor
(
Takifugu rubripes
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF05225 (HTH_psq)
IPR007889
ENSTRUG00000006194
T313628_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.939
0.939
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT
AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.956
0.956
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.909
0.909
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.889
0.889
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.800
0.800
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000015075
Pipsqueak
508
553
NSEILEEAITVVMSGKMSVSKAQSMYGIPHSTLEYKVKERMGTLKN
ENSTRUP00000015076
Pipsqueak
272
304
NSEILEEAITVVMSGKMSVSKAQSMYGIPHSTL
ENSTRUP00000015077
Pipsqueak
422
467
NSEILEEAITVVMSGKMSVSKAQSMYGIPHSTLEYKVKERMGTLKN
ENSTRUP00000015078
Pipsqueak
372
417
NSEILEEAITVVMSGKMSVSKAQSMYGIPHSTLEYKVKERMGTLKN
Links
Other
Pipsqueak
family TFs
Other
Takifugu rubripes
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy