Carubv10005524m.g (Capsella rubella)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Carubv10005524m.g T315982_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10005524m PLATZ 124 196

Links

Other PLATZ family TFs
Other Capsella rubella TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3356s0083 Capsella grandiflora Cagra.3356s0083 N 1.000
fgenesh2_kg.7__2515__AT4G17900.1 Arabidopsis lyrata fgenesh2_kg.7__2515__AT4G17900.1 N 0.986
Bostr.30275s0258 Boechera stricta Bostr.30275s0258 N 0.986
AT4G17900 Arabidopsis thaliana AT4G17900 N 0.973
Bo8g049810 Brassica oleracea Bo8g049810 N 0.973
Thhalv10026159m.g Eutrema salsugineum Thhalv10026159m.g N 0.973
Bra021029 Brassica rapa Bra021029 N 0.959
Bra013266 Brassica rapa Bra013266 N 0.959
Bo7g105550 Brassica oleracea Bo7g105550 N 0.959
Bra012632 Brassica rapa Bra012632 N 0.945
Bo1g018010 Brassica oleracea Bo1g018010 N 0.945
Bra025003 Brassica rapa Bra025003 N 0.918
Bo7g075640 Brassica oleracea Bo7g075640 N 0.918
TCM_015701 Theobroma cacao TCM_015701 N 0.890
Gorai.004G184500 Gossypium raimondii Gorai.004G184500 N 0.890
Carubv10009979m.g Capsella rubella Carubv10009979m.g N 0.889
Al_scaffold_0001_3341 Arabidopsis lyrata Al_scaffold_0001_3341 N 0.889
Cagra.4962s0001 Capsella grandiflora Cagra.4962s0001 N 0.889
Bostr.3359s0088 Boechera stricta Bostr.3359s0088 N 0.889
Gorai.008G226100 Gossypium raimondii Gorai.008G226100 N 0.889
AT1G32700 Arabidopsis thaliana AT1G32700 N 0.889
Bra023280 Brassica rapa Bra023280 N 0.877
Bra035494 Brassica rapa Bra035494 N 0.877
Gorai.003G183000 Gossypium raimondii Gorai.003G183000 N 0.877
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N 0.877
Bo8g028900 Brassica oleracea Bo8g028900 N 0.877
Thhalv10001013m.g Eutrema salsugineum Thhalv10001013m.g N 0.877
PRUPE_ppa011266mg Prunus persica PRUPE_ppa011266mg N 0.875
Lus10040082.g Linum usitatissimum Lus10040082.g N 0.875
Pm023220 Prunus mume Pm023220 N 0.875
Lus10030968.g Linum usitatissimum Lus10030968.g N 0.875
Gorai.007G032400 Gossypium raimondii Gorai.007G032400 N 0.875
Bo5g049240 Brassica oleracea Bo5g049240 N 0.863
MTR_5g030130 Medicago truncatula MTR_5g030130 N 0.863
30054.m000824 Ricinus communis 30054.m000824 N 0.861
GRMZM2G091044 Zea mays GRMZM2G091044 N 0.861
GLYMA08G36641 Glycine max GLYMA08G36641 N 0.861
gene02186-v1.0-hybrid Fragaria vesca gene02186-v1.0-hybrid N 0.861
Pavir.Aa01152 Panicum virgatum Pavir.Aa01152 N 0.861
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N 0.861
Sb04g031230 Sorghum bicolor Sb04g031230 N 0.861
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N 0.861
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N 0.861
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N 0.861
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N 0.861
Pavir.Ab01769 Panicum virgatum Pavir.Ab01769 N 0.861
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N 0.861
MTR_8g066820 Medicago truncatula MTR_8g066820 N 0.861
LPERR04G19240 Leersia perrieri LPERR04G19240 N 0.849
Gorai.006G217100 Gossypium raimondii Gorai.006G217100 N 0.849
BRADI3G52170 Brachypodium distachyon BRADI3G52170 N 0.849
PGSC0003DMG400017518 Solanum tuberosum PGSC0003DMG400017518 N 0.849
MDP0000570901 Malus domestica MDP0000570901 N 0.849
PGSC0003DMG400007670 Solanum tuberosum PGSC0003DMG400007670 N 0.849
mgf006925m Mimulus guttatus mgf006925m N 0.849
SapurV1A.0151s0140 Salix purpurea SapurV1A.0151s0140 N 0.849
SapurV1A.5427s0010 Salix purpurea SapurV1A.5427s0010 N 0.849
LjSGA_028172.2 Lotus japonicus LjSGA_028172.2 N 0.849
Solyc06g061240.2 Solanum lycopersicum Solyc06g061240.2 N 0.849
Solyc08g076860.2 Solanum lycopersicum Solyc08g076860.2 N 0.849
Ca_12361 Cicer arietinum Ca_12361 N 0.849
VIT_02s0012g01400 Vitis vinifera VIT_02s0012g01400 N 0.847
OB02G35810 Oryza brachyantha OB02G35810 N 0.847
Cucsa.313040 Cucumis sativus Cucsa.313040 N 0.847
ORGLA02G0246600 Oryza glaberrima ORGLA02G0246600 N 0.847
OPUNC02G26310 Oryza punctata OPUNC02G26310 N 0.847
ONIVA02G31400 Oryza nivara ONIVA02G31400 N 0.847
OLONG_023395 Oryza longistaminata OLONG_023395 N 0.847
ORUFI02G30220 Oryza rufipogon ORUFI02G30220 N 0.847
Ca_11505 Cicer arietinum Ca_11505 N 0.847
OS02G0692700 Oryza sativa OS02G0692700 N 0.847
OBART02G28660 Oryza barthii OBART02G28660 N 0.847
OGLUM02G29250 Oryza glumaepatula OGLUM02G29250 N 0.847
Cla016461 Citrullus lanatus Cla016461 N 0.847
Eucgr.E00276 Eucalyptus grandis Eucgr.E00276 N 0.847
Lus10004577.g Linum usitatissimum Lus10004577.g N 0.847
GSMUA_Achr5G18120_001 Musa acuminata GSMUA_Achr5G18120_001 N 0.847
GLYMA09G33770 Glycine max GLYMA09G33770 N 0.847
GLYMA01G02180 Glycine max GLYMA01G02180 N 0.847
BGIOSGA005806 Oryza indica BGIOSGA005806 N 0.847
Eucgr.D02206 Eucalyptus grandis Eucgr.D02206 N 0.847
GLYMA01G11390 Glycine max GLYMA01G11390 N 0.847
LPERR02G23300 Leersia perrieri LPERR02G23300 N 0.847
F775_28196 Aegilops tauschii F775_28196 N 0.836
MTR_4g078170 Medicago truncatula MTR_4g078170 N 0.836
ORUFI04G25190 Oryza rufipogon ORUFI04G25190 N 0.836
OB04G30420 Oryza brachyantha OB04G30420 N 0.836
ORGLA04G0200500 Oryza glaberrima ORGLA04G0200500 N 0.836
OS04G0591100 Oryza sativa OS04G0591100 N 0.836
Si017318m.g Setaria italica Si017318m.g N 0.836
BGIOSGA014451 Oryza indica BGIOSGA014451 N 0.836
Pavir.Ga00766 Panicum virgatum Pavir.Ga00766 N 0.836
Traes_2AL_74EFA5757 Triticum aestivum Traes_2AL_74EFA5757 N 0.836
Pavir.Gb00818 Panicum virgatum Pavir.Gb00818 N 0.836
Traes_2BL_69847FCA6 Triticum aestivum Traes_2BL_69847FCA6 N 0.836
SapurV1A.1507s0030 Salix purpurea SapurV1A.1507s0030 N 0.836
MDP0000553473 Malus domestica MDP0000553473 N 0.836
TRIUR3_25489 Triticum urartu TRIUR3_25489 N 0.836
mgf002787m Mimulus guttatus mgf002787m N 0.836
OPUNC04G21040 Oryza punctata OPUNC04G21040 N 0.836
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N 0.836
evm.TU.supercontig_71.62 Carica papaya evm.TU.supercontig_71.62 N 0.836
OGLUM04G23440 Oryza glumaepatula OGLUM04G23440 N 0.836
OBART04G23520 Oryza barthii OBART04G23520 N 0.836
PK20928.1 Cannabis sativa PK20928.1 N 0.836
chr3.CM0127.220.nc Lotus japonicus chr3.CM0127.220.nc N 0.836
Sb06g027000 Sorghum bicolor Sb06g027000 N 0.836
Si010911m.g Setaria italica Si010911m.g N 0.836
GRMZM2G131280 Zea mays GRMZM2G131280 N 0.836
Cla008966 Citrullus lanatus Cla008966 N 0.836
SapurV1A.0555s0010 Salix purpurea SapurV1A.0555s0010 N 0.836
ONIVA04G22750 Oryza nivara ONIVA04G22750 N 0.836
Lus10020337.g Linum usitatissimum Lus10020337.g N 0.836
GRMZM2G004548 Zea mays GRMZM2G004548 N 0.836
Cucsa.321900 Cucumis sativus Cucsa.321900 N 0.836
MLOC_69202 Hordeum vulgare MLOC_69202 N 0.836
Ca_11837 Cicer arietinum Ca_11837 N 0.833
evm.TU.supercontig_43.104 Carica papaya evm.TU.supercontig_43.104 N 0.833
Ciclev10032089m.g Citrus clementina Ciclev10032089m.g N 0.833
Gorai.003G056500 Gossypium raimondii Gorai.003G056500 N 0.833
MDP0000133007 Malus domestica MDP0000133007 N 0.833
MDP0000225862 Malus domestica MDP0000225862 N 0.833
MDP0000133008 Malus domestica MDP0000133008 N 0.833
orange1.1g026096m.g Citrus sinensis orange1.1g026096m.g N 0.833
TCM_025548 Theobroma cacao TCM_025548 N 0.833
GLYMA11G01100 Glycine max GLYMA11G01100 N 0.833
GRMZM2G086403 Zea mays GRMZM2G086403 N 0.833
GSMUA_Achr5G13970_001 Musa acuminata GSMUA_Achr5G13970_001 N 0.833
GSMUA_Achr5G03420_001 Musa acuminata GSMUA_Achr5G03420_001 N 0.833
GLYMA01G44430 Glycine max GLYMA01G44430 N 0.833
MLOC_63157 Hordeum vulgare MLOC_63157 N 0.833
GLYMA12G01890 Glycine max GLYMA12G01890 N 0.822
GLYMA11G11640 Glycine max GLYMA11G11640 N 0.822
30073.m002298 Ricinus communis 30073.m002298 N 0.822
cassava13685.valid.m1 Manihot esculenta cassava13685.valid.m1 N 0.822
Traes_6DL_CF3557CFC Triticum aestivum Traes_6DL_CF3557CFC N 0.822
Pm022874 Prunus mume Pm022874 N 0.822
cassava22380.valid.m1 Manihot esculenta cassava22380.valid.m1 N 0.822
PRUPE_ppa010445mg Prunus persica PRUPE_ppa010445mg N 0.822
PK14253.1 Cannabis sativa PK14253.1 N 0.822
VIT_18s0122g00320 Vitis vinifera VIT_18s0122g00320 N 0.822
POPTR_0019s07790 Populus trichocarpa POPTR_0019s07790 N 0.822
GSMUA_Achr4G27280_001 Musa acuminata GSMUA_Achr4G27280_001 N 0.822
Lus10000952.g Linum usitatissimum Lus10000952.g N 0.819
GSMUA_Achr2G18160_001 Musa acuminata GSMUA_Achr2G18160_001 N 0.819
Gorai.013G184000 Gossypium raimondii Gorai.013G184000 N 0.819
Lus10002700.g Linum usitatissimum Lus10002700.g N 0.819
GSMUA_Achr11G17810_001 Musa acuminata GSMUA_Achr11G17810_001 N 0.808
Aquca_095_00049 Aquilegia coerulea Aquca_095_00049 N 0.808
cassava7406.valid.m1 Manihot esculenta cassava7406.valid.m1 N 0.808
30170.m013811 Ricinus communis 30170.m013811 N 0.808
Ca_11235 Cicer arietinum Ca_11235 N 0.808
XM_002306973.1 Populus trichocarpa POPTR_0005s28040 N 0.808
POPTR_0002s00430 Populus trichocarpa POPTR_0002s00430 N 0.808
SapurV1A.0016s0060 Salix purpurea SapurV1A.0016s0060 N 0.808
PGSC0003DMG400017849 Solanum tuberosum PGSC0003DMG400017849 N 0.808
chr1.CM0591.460.nd Lotus japonicus chr1.CM0591.460.nd N 0.808
POPTR_0013s07610 Populus trichocarpa POPTR_0013s07610 N 0.808
SapurV1A.0554s0100 Salix purpurea SapurV1A.0554s0100 N 0.808
VIT_16s0039g01560 Vitis vinifera VIT_16s0039g01560 N 0.808
Thhalv10008598m.g Eutrema salsugineum Thhalv10008598m.g N 0.806
Bra025865 Brassica rapa Bra025865 N 0.806
AT1G21000 Arabidopsis thaliana AT1G21000 N 0.806
Lus10000482.g Linum usitatissimum Lus10000482.g N 0.806
MTR_5g007230 Medicago truncatula MTR_5g007230 N 0.806
AMTR_s00002p00211460 Amborella trichopoda AMTR_s00002p00211460 N 0.806
GSMUA_Achr8G14740_001 Musa acuminata GSMUA_Achr8G14740_001 N 0.806
PGSC0003DMG400009931 Solanum tuberosum PGSC0003DMG400009931 N 0.806
Bra017531 Brassica rapa Bra017531 N 0.800
Bo5g030950 Brassica oleracea Bo5g030950 N 0.795
Solyc08g005100.2 Solanum lycopersicum Solyc08g005100.2 N 0.795
Ciclev10002292m.g Citrus clementina Ciclev10002292m.g N 0.795
SapurV1A.0182s0280 Salix purpurea SapurV1A.0182s0280 N 0.795
orange1.1g025742m.g Citrus sinensis orange1.1g025742m.g N 0.795
Bra012263 Brassica rapa Bra012263 N 0.795
TRIUR3_30366 Triticum urartu TRIUR3_30366 N 0.795
SapurV1A.1141s0070 Salix purpurea SapurV1A.1141s0070 N 0.795
Bo7g059750 Brassica oleracea Bo7g059750 N 0.795
Lus10040292.g Linum usitatissimum Lus10040292.g N 0.792
Carubv10009696m.g Capsella rubella Carubv10009696m.g N 0.792
gene29145-v1.0-hybrid Fragaria vesca gene29145-v1.0-hybrid N 0.792
Bostr.7128s0691 Boechera stricta Bostr.7128s0691 N 0.792
Cagra.7414s0001 Capsella grandiflora Cagra.7414s0001 N 0.792
e_gw1.1.253.1 Physcomitrella patens e_gw1.1.253.1 N 0.792
TCM_034802 Theobroma cacao TCM_034802 N 0.792
scaffold_102351.1 Arabidopsis lyrata scaffold_102351.1 N 0.792
fgenesh1_pg.scaffold_102000043 Physcomitrella patens fgenesh1_pg.scaffold_102000043 N 0.792
SapurV1A.1628s0020 Salix purpurea SapurV1A.1628s0020 N 0.790
mgf004069m Mimulus guttatus mgf004069m N 0.781
Carubv10020852m.g Capsella rubella Carubv10020852m.g N 0.781
Bra015731 Brassica rapa Bra015731 N 0.781
cassava13654.valid.m1 Manihot esculenta cassava13654.valid.m1 N 0.781
Bra016441 Brassica rapa Bra016441 N 0.781
GSMUA_Achr4G19110_001 Musa acuminata GSMUA_Achr4G19110_001 N 0.781
Cagra.2281s0027 Capsella grandiflora Cagra.2281s0027 N 0.781
Eucgr.F01950 Eucalyptus grandis Eucgr.F01950 N 0.781
Bo6g120700 Brassica oleracea Bo6g120700 N 0.781
PK01309.1 Cannabis sativa PK01309.1 N 0.781
scaffold_800157.1 Arabidopsis lyrata scaffold_800157.1 N 0.781
Bostr.20129s0097 Boechera stricta Bostr.20129s0097 N 0.781
AT1G76590 Arabidopsis thaliana AT1G76590 N 0.781
Thhalv10019067m.g Eutrema salsugineum Thhalv10019067m.g N 0.781
Bostr.28243s0064 Boechera stricta Bostr.28243s0064 N 0.781
mgf010773m Mimulus guttatus mgf010773m N 0.781
MLOC_59330 Hordeum vulgare MLOC_59330 N 0.778
TRIUR3_12775 Triticum urartu TRIUR3_12775 N 0.778
Bra003715 Brassica rapa Bra003715 N 0.778
Traes_7DL_3547B7B9A Triticum aestivum Traes_7DL_3547B7B9A N 0.778
F775_08136 Aegilops tauschii F775_08136 N 0.778
Bo6g084850 Brassica oleracea Bo6g084850 N 0.778
BRADI1G35697 Brachypodium distachyon BRADI1G35697 N 0.778
Lus10023411.g Linum usitatissimum Lus10023411.g N 0.767
AMTR_s00008p00208550 Amborella trichopoda AMTR_s00008p00208550 N 0.767
OB10G26540 Oryza brachyantha OB10G26540 N 0.767
fgenesh2_kg.2__1947__AT1G76590.1 Arabidopsis lyrata fgenesh2_kg.2__1947__AT1G76590.1 N 0.767
Eucgr.F03621 Eucalyptus grandis Eucgr.F03621 N 0.767
e_gw1.6.367.1 Physcomitrella patens e_gw1.6.367.1 N 0.767
estExt_gwp_gw1.C_1330066 Physcomitrella patens estExt_gwp_gw1.C_1330066 N 0.767
GSMUA_Achr9G12280_001 Musa acuminata GSMUA_Achr9G12280_001 N 0.767
GSMUA_Achr7G20650_001 Musa acuminata GSMUA_Achr7G20650_001 N 0.767
Si007136m.g Setaria italica Si007136m.g N 0.764
ONIVA06G25330 Oryza nivara ONIVA06G25330 N 0.764
OPUNC06G19460 Oryza punctata OPUNC06G19460 N 0.764
ORGLA06G0177200 Oryza glaberrima ORGLA06G0177200 N 0.764
BGIOSGA023292 Oryza indica BGIOSGA023292 N 0.764
Pavir.Da00498 Panicum virgatum Pavir.Da00498 N 0.764
Pavir.Db00732 Panicum virgatum Pavir.Db00732 N 0.764
OS06G0624900 Oryza sativa OS06G0624900 N 0.764
ORUFI06G22980 Oryza rufipogon ORUFI06G22980 N 0.764
OMERI01G31170 Oryza meridionalis OMERI01G31170 N 0.764
Sb10g024575 Sorghum bicolor Sb10g024575 N 0.764
OB06G29400 Oryza brachyantha OB06G29400 N 0.764
OBART06G21430 Oryza barthii OBART06G21430 N 0.764
GSMUA_AchrUn_randomG24560_001 Musa acuminata GSMUA_AchrUn_randomG24560_001 N 0.764
OLONG_015674 Oryza longistaminata OLONG_015674 N 0.764
LPERR06G17910 Leersia perrieri LPERR06G17910 N 0.764
OGLUM06G22610 Oryza glumaepatula OGLUM06G22610 N 0.764
Cagra.0751s0029 Capsella grandiflora Cagra.0751s0029 N 0.753
Bo8g070540 Brassica oleracea Bo8g070540 N 0.753
Carubv10027053m.g Capsella rubella Carubv10027053m.g N 0.753
Bo9g065480 Brassica oleracea Bo9g065480 N 0.741
30078.m002228 Ricinus communis 30078.m002228 N 0.740
orange1.1g028382m.g Citrus sinensis orange1.1g028382m.g N 0.740
Cucsa.318510 Cucumis sativus Cucsa.318510 N 0.740
Ciclev10012756m.g Citrus clementina Ciclev10012756m.g N 0.740
Aquca_009_01064 Aquilegia coerulea Aquca_009_01064 N 0.740
Cla010408 Citrullus lanatus Cla010408 N 0.740
cassava15058.m1 Manihot esculenta cassava15058.m1 N 0.740
Lus10035554.g Linum usitatissimum Lus10035554.g N 0.736
PK29286.1 Cannabis sativa PK29286.1 N 0.736
Lus10027735.g Linum usitatissimum Lus10027735.g N 0.736
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N 0.736
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N 0.736
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N 0.736
TCM_022356 Theobroma cacao TCM_022356 N 0.726
GLYMA10G07240 Glycine max GLYMA10G07240 N 0.726
Gorai.009G411200 Gossypium raimondii Gorai.009G411200 N 0.726
GSMUA_Achr6G36360_001 Musa acuminata GSMUA_Achr6G36360_001 N 0.726
VIT_08s0007g04560 Vitis vinifera VIT_08s0007g04560 N 0.726
mgf023930m Mimulus guttatus mgf023930m N 0.722
POPTR_0016s10920 Populus trichocarpa POPTR_0016s10920 N 0.722
MTR_7g102790 Medicago truncatula MTR_7g102790 N 0.722
Aquca_019_00150 Aquilegia coerulea Aquca_019_00150 N 0.712
GSMUA_Achr7G04460_001 Musa acuminata GSMUA_Achr7G04460_001 N 0.712
GLYMA13G21140 Glycine max GLYMA13G21140 N 0.712
POPTR_0006s12100 Populus trichocarpa POPTR_0006s12100 N 0.712
GSMUA_AchrUn_randomG07560_001 Musa acuminata GSMUA_AchrUn_randomG07560_001 N 0.712
cassava9017.m1 Manihot esculenta cassava9017.m1 N 0.712
GLYMA19G37220 Glycine max GLYMA19G37220 N 0.712
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N 0.712
AMTR_s00022p00039680 Amborella trichopoda AMTR_s00022p00039680 N 0.712
Ca_00735 Cicer arietinum Ca_00735 N 0.708
Traes_1BL_C202F3DE1 Triticum aestivum Traes_1BL_C202F3DE1 N 0.708
e_gw1.35.314.1 Physcomitrella patens e_gw1.35.314.1 N 0.708
SELMODRAFT_69065 Selaginella moellendorffii SELMODRAFT_69065 N 0.708
SELMODRAFT_69064 Selaginella moellendorffii SELMODRAFT_69064 N 0.708
orange1.1g028583m.g Citrus sinensis orange1.1g028583m.g N 0.703