Carubv10027053m.g (Capsella rubella)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Carubv10027053m.g T315995_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027053m PLATZ 89 161
Carubv10027103m PLATZ 76 148

Links

Other PLATZ family TFs
Other Capsella rubella TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0751s0029 Capsella grandiflora Cagra.0751s0029 N 0.986
Bostr.28243s0064 Boechera stricta Bostr.28243s0064 N 0.918
scaffold_800157.1 Arabidopsis lyrata scaffold_800157.1 N 0.918
AT5G46710 Arabidopsis thaliana AT5G46710 N 0.836
Thhalv10001013m.g Eutrema salsugineum Thhalv10001013m.g N 0.795
Bra025003 Brassica rapa Bra025003 N 0.795
Bo7g105550 Brassica oleracea Bo7g105550 N 0.795
Bo7g075640 Brassica oleracea Bo7g075640 N 0.795
Gorai.003G183000 Gossypium raimondii Gorai.003G183000 N 0.781
Thhalv10026159m.g Eutrema salsugineum Thhalv10026159m.g N 0.767
fgenesh2_kg.7__2515__AT4G17900.1 Arabidopsis lyrata fgenesh2_kg.7__2515__AT4G17900.1 N 0.767
AT4G17900 Arabidopsis thaliana AT4G17900 N 0.767
Bostr.30275s0258 Boechera stricta Bostr.30275s0258 N 0.767
Bra013266 Brassica rapa Bra013266 N 0.767
TCM_015701 Theobroma cacao TCM_015701 N 0.753
Lus10004577.g Linum usitatissimum Lus10004577.g N 0.753
Cagra.3356s0083 Capsella grandiflora Cagra.3356s0083 N 0.753
Carubv10005524m.g Capsella rubella Carubv10005524m.g N 0.753
Bo1g018010 Brassica oleracea Bo1g018010 N 0.753
Gorai.004G184500 Gossypium raimondii Gorai.004G184500 N 0.753
Bra012632 Brassica rapa Bra012632 N 0.753
Gorai.006G217100 Gossypium raimondii Gorai.006G217100 N 0.753
Bra021029 Brassica rapa Bra021029 N 0.753
Gorai.008G226100 Gossypium raimondii Gorai.008G226100 N 0.750
Solyc06g061240.2 Solanum lycopersicum Solyc06g061240.2 N 0.740
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N 0.740
mgf006925m Mimulus guttatus mgf006925m N 0.740
evm.TU.supercontig_71.62 Carica papaya evm.TU.supercontig_71.62 N 0.740
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N 0.740
Gorai.007G032400 Gossypium raimondii Gorai.007G032400 N 0.740
Bo8g049810 Brassica oleracea Bo8g049810 N 0.740
PGSC0003DMG400007670 Solanum tuberosum PGSC0003DMG400007670 N 0.740
PGSC0003DMG400017518 Solanum tuberosum PGSC0003DMG400017518 N 0.740
Lus10000482.g Linum usitatissimum Lus10000482.g N 0.736
Solyc08g076860.2 Solanum lycopersicum Solyc08g076860.2 N 0.726
PRUPE_ppa011266mg Prunus persica PRUPE_ppa011266mg N 0.726
PGSC0003DMG400017849 Solanum tuberosum PGSC0003DMG400017849 N 0.726
Bostr.3359s0088 Boechera stricta Bostr.3359s0088 N 0.722
Carubv10009979m.g Capsella rubella Carubv10009979m.g N 0.722
Cagra.4962s0001 Capsella grandiflora Cagra.4962s0001 N 0.722
Lus10030968.g Linum usitatissimum Lus10030968.g N 0.722
Al_scaffold_0001_3341 Arabidopsis lyrata Al_scaffold_0001_3341 N 0.722
PGSC0003DMG400009931 Solanum tuberosum PGSC0003DMG400009931 N 0.722
Lus10040082.g Linum usitatissimum Lus10040082.g N 0.722
Pm023220 Prunus mume Pm023220 N 0.722
AT1G32700 Arabidopsis thaliana AT1G32700 N 0.722
LjSGA_028172.2 Lotus japonicus LjSGA_028172.2 N 0.712
PK14253.1 Cannabis sativa PK14253.1 N 0.712
MDP0000553473 Malus domestica MDP0000553473 N 0.712
Lus10020337.g Linum usitatissimum Lus10020337.g N 0.712
MDP0000570901 Malus domestica MDP0000570901 N 0.712
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N 0.712
30054.m000824 Ricinus communis 30054.m000824 N 0.712
MTR_5g030130 Medicago truncatula MTR_5g030130 N 0.712
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N 0.712
PRUPE_ppa010445mg Prunus persica PRUPE_ppa010445mg N 0.712
Bra035494 Brassica rapa Bra035494 N 0.712
Bra023280 Brassica rapa Bra023280 N 0.712
Bo8g028900 Brassica oleracea Bo8g028900 N 0.712
Bo9g065480 Brassica oleracea Bo9g065480 N 0.712
Solyc08g005100.2 Solanum lycopersicum Solyc08g005100.2 N 0.712
VIT_18s0122g00320 Vitis vinifera VIT_18s0122g00320 N 0.712
mgf002787m Mimulus guttatus mgf002787m N 0.712
mgf004069m Mimulus guttatus mgf004069m N 0.712
mgf010773m Mimulus guttatus mgf010773m N 0.712
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N 0.712
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N 0.712
Ca_12361 Cicer arietinum Ca_12361 N 0.712
Pm022874 Prunus mume Pm022874 N 0.712
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N 0.708
Lus10000952.g Linum usitatissimum Lus10000952.g N 0.708
Lus10002700.g Linum usitatissimum Lus10002700.g N 0.708
MTR_8g066820 Medicago truncatula MTR_8g066820 N 0.708
GLYMA08G36641 Glycine max GLYMA08G36641 N 0.708
Bra017531 Brassica rapa Bra017531 N 0.707