NFKB1 (Pan troglodytes)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00554 (RHD_DNA_bind) IPR011539 ENSPTRG00000016320 T317464_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFKB1
M03448_2.00
Homo sapiens
MGGGGAWTCCCCT

AGGGGAWTCCCCK
SELEX
Jolma et al.(2013)
NFKB1_1
1.000 1.000
NFKB1
M05887_2.00
Homo sapiens
NGGKRNTYYCCCN

NGGGRRANYMCCN
SMiLE-seq
Isakova et al.(2017)
NFKB1
1.000 1.000
NFKB1
M09348_2.00
Homo sapiens
HYTTCCCY

RGGGAARD
Misc
Kulakovskiy et al.(2013)
NFKB1_HUMAN.H11MO.0.A
1.000 1.000
NFKB1
M11228_2.00
Homo sapiens
GGGGATYCCC

GGGRATCCCC
Transfac
Matys et al.(2006)
V$NFKAPPAB50_01
1.000 1.000
NFKB1
M11229_2.00
Homo sapiens
NGGGAHTYYCCM

KGGRRADTCCCN
Transfac
Matys et al.(2006)
V$NFKB_C
1.000 1.000
NFKB1
M11230_2.00
Homo sapiens
DKGGGAMTTYCCNN

NNGGRAAKTCCCMH
Transfac
Matys et al.(2006)
V$NFKB_Q6
1.000 1.000
NFKB1
M11231_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P50_Q6
1.000 1.000
Nfkb1
M09358_2.00
Mus musculus
GGGRNTTYCCC

GGGRAANYCCC
Misc
Kulakovskiy et al.(2013)
NFKB1_MOUSE.H11MO.0.A
0.982 0.982
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000028033 Rel 45 243

Links

Other Rel family TFs
Other Pan troglodytes TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N 0.000
Carubv10002492m.g Capsella rubella Carubv10002492m.g N 0.000
Cagra.7526s0026 Capsella grandiflora Cagra.7526s0026 N 0.000
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N 0.000
Aquca_001_00810 Aquilegia coerulea Aquca_001_00810 N 0.000
Cucsa.310460 Cucumis sativus Cucsa.310460 N 0.000
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N 0.000
29848.m004652 Ricinus communis 29848.m004652 N 0.000
Pm004594 Prunus mume Pm004594 N 0.000
Cla021272 Citrullus lanatus Cla021272 N 0.000
OCP3 Vitis vinifera VIT_04s0008g05190 N 0.000
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N 0.000
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N 0.000
PK00680.1 Cannabis sativa PK00680.1 N 0.000
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N 0.000
SapurV1A.0043s0520 Salix purpurea SapurV1A.0043s0520 N 0.000
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N 0.000
MDP0000202143 Malus domestica MDP0000202143 N 0.000
MDP0000119866 Malus domestica MDP0000119866 N 0.000
Lus10002899.g Linum usitatissimum Lus10002899.g N 0.000
Lus10002029.g Linum usitatissimum Lus10002029.g N 0.000
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N 0.000
gene11668-v1.0-hybrid Fragaria vesca gene11668-v1.0-hybrid N 0.000
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N 0.000
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N 0.000
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N 0.000
OB06G27850 Oryza brachyantha OB06G27850 N 0.000
MTR_3g107530 Medicago truncatula MTR_3g107530 N 0.000
MLOC_45474 Hordeum vulgare MLOC_45474 N 0.000
GSMUA_Achr7G08370_001 Musa acuminata GSMUA_Achr7G08370_001 N 0.000
GLYMA06G07330 Glycine max GLYMA06G07330 N 0.000
GLYMA04G07230 Glycine max GLYMA04G07230 N 0.000
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N 0.000
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N 0.000
Bra008975 Brassica rapa Bra008975 N 0.000
BGIOSGA023211 Oryza indica BGIOSGA023211 N 0.000
OBART06G20210 Oryza barthii OBART06G20210 N 0.000
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N 0.000
TCM_038389 Theobroma cacao TCM_038389 N 0.000
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N 0.000
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N 0.000
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N 0.000
OS06G0601000 Oryza sativa OS06G0601000 N 0.000
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N 0.000
OPUNC06G18430 Oryza punctata OPUNC06G18430 N 0.000
ONIVA06G23990 Oryza nivara ONIVA06G23990 N 0.000
OMERI06G20820 Oryza meridionalis OMERI06G20820 N 0.000
OLONG_013537 Oryza longistaminata OLONG_013537 N 0.000
OCP3 Arabidopsis thaliana AT5G11270 N 0.000