YQE_12216 (Dendroctonus ponderosae)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 YQE_12216 T319636_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.700 0.700
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.700 0.700
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.700 0.700
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.700 0.700
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.700 0.700
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.700 0.700
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.700 0.700
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.700 0.700
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.700 0.700
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.700 0.700
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.700 0.700
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN71291 Runt 40 150

Links

Other Runt family TFs
Other Dendroctonus ponderosae TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AARA011332 Anopheles arabiensis AARA011332 I 0.876
BGIBMGA008970 Bombyx mori BGIBMGA008970 I 0.842
TC005566 Tribolium castaneum TC005566 I 0.836
AATE002063 Anopheles atroparvus AATE002063 I 0.827
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.827
AAEL006160 Aedes aegypti AAEL006160 I 0.827
LDEC006650 Leptinotarsa decemlineata LDEC006650 I 0.809
KGM_21075 Danaus plexippus KGM_21075 I 0.800
ADIR001029 Anopheles dirus ADIR001029 I 0.791
MDOA011942 Musca domestica MDOA011942 I 0.791
ACUA002933 Anopheles culicifacies ACUA002933 I 0.782
TC006536 Tribolium castaneum TC006536 I 0.782
LLOJ002049 Lutzomyia longipalpis LLOJ002049 I 0.782
AMIN005760 Anopheles minimus AMIN005760 I 0.782
AMEC011614 Anopheles melas AMEC011614 I 0.782
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.782
NV11000 Nasonia vitripennis NV11000 I 0.773
AALB007753 Anopheles albimanus AALB007753 I 0.773
AFUN010424 Anopheles funestus AFUN010424 I 0.773
ASIS002518 Anopheles sinensis ASIS002518 I 0.773
PPAI010985 Phlebotomus papatasi PPAI010985 I 0.773
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.773
AMEM009849 Anopheles merus AMEM009849 N 0.773
AEPI011470 Anopheles epiroticus AEPI011470 I 0.773
AFAF002111 Anopheles farauti AFAF002111 I 0.773
ACHR007816 Anopheles christyi ACHR007816 I 0.773
GB52761 Apis mellifera GB52761 I 0.773
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.773
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.773
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.764
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.764
HMEL009843 Heliconius melpomene HMEL009843 I 0.755
HMEL014738 Heliconius melpomene HMEL014738 I 0.748
PHUM333340 Pediculus humanus PHUM333340 I 0.745
YQE_12218 Dendroctonus ponderosae YQE_12218 I 0.745
TC005796 Tribolium castaneum TC005796 I 0.745
NV10998 Nasonia vitripennis NV10998 I 0.736
LCUP002657 Lucilia cuprina LCUP002657 I 0.736
CLEC011123 Cimex lectularius CLEC011123 I 0.736
SBAD_0000678401 Soboliphyme baturini SBAD_0000678401 N 0.731
MCINX000302 Melitaea cinxia MCINX000302 I 0.727
ACEP16397 Atta cephalotes ACEP16397 I 0.727
Cflo_03913--XP_394013.3_APIME Camponotus floridanus Cflo_03913--XP_394013.3_APIME I 0.727
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.727
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.727
SINV13317 Solenopsis invicta SINV13317 I 0.727
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.727
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.727
RunxB Drosophila melanogaster FBgn0259162 I 0.718
RPRC005391 Rhodnius prolixus RPRC005391 I 0.718
RPRC000026 Rhodnius prolixus RPRC000026 I 0.718
GE17890 Drosophila yakuba FBgn0235328 I 0.718
PHUM333300 Pediculus humanus PHUM333300 I 0.718
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.718
GD17495 Drosophila simulans FBgn0189047 I 0.718
GK19810 Drosophila willistoni FBgn0221808 I 0.718
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.718
CLEC011127 Cimex lectularius CLEC011127 I 0.718
GG19691 Drosophila erecta FBgn0111893 I 0.718
GF15967 Drosophila ananassae FBgn0092990 I 0.718
GJ19245 Drosophila virilis FBgn0206390 I 0.718
GM23044 Drosophila sechellia FBgn0177912 I 0.718
GL15800 Drosophila persimilis FBgn0153404 I 0.718
GH17737 Drosophila grimshawi FBgn0125207 I 0.718
ACOM036889 Anopheles coluzzii ACOM036889 N 0.716
runx3 Xenopus tropicalis XB-GENE-487784 I 0.709
ENSGALG00000026821 Gallus gallus ENSGALG00000026821 I 0.709
estExt_fgenesh2_kg.C_750001 Branchiostoma floridae estExt_fgenesh2_kg.C_750001 I 0.709
Pvit_17193 Pogona vitticeps Pvit_17193 I 0.709
RUNX3 Dasypus novemcinctus ENSDNOG00000043493 I 0.709
Cmyd_10020845 Chelonia mydas Cmyd_10020845 I 0.709
ENSFALG00000000470 Ficedula albicollis ENSFALG00000000470 I 0.709
estExt_fgenesh2_kg.C_3770001 Branchiostoma floridae estExt_fgenesh2_kg.C_3770001 I 0.709
L798_10922 Zootermopsis nevadensis L798_10922 I 0.709
ENSAPLG00000016439 Anas platyrhynchos ENSAPLG00000016439 I 0.709
MDOA013149 Musca domestica MDOA013149 I 0.709
ENSPSIG00000012728 Pelodiscus sinensis ENSPSIG00000012728 I 0.709
RUNX3 Taeniopygia guttata ENSTGUG00000001130 I 0.709
ENSMODG00000013941 Monodelphis domestica ENSMODG00000013941 I 0.709
RUNX3 Loxodonta africana ENSLAFG00000008382 I 0.709
KGM_02818 Danaus plexippus KGM_02818 I 0.709
AAEL007036 Aedes aegypti AAEL007036 I 0.709
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.700
CPIJ006369 Culex quinquefasciatus CPIJ006369 I 0.700
ENSAMEG00000010102 Ailuropoda melanoleuca ENSAMEG00000010102 I 0.700
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.700
RUNX3 Felis catus ENSFCAG00000000680 I 0.700
RUNX3 Homo sapiens ENSG00000020633 D 0.700
ENSCSAG00000000947 Chlorocebus sabaeus ENSCSAG00000000947 I 0.700
ENSCPOG00000000551 Cavia porcellus ENSCPOG00000000551 I 0.700
runx3 Danio rerio ENSDARG00000052826 I 0.700
RUNX3 Canis familiaris ENSCAFG00000012903 I 0.700
SMAR009403 Strigamia maritima SMAR009403 I 0.700
runx3 Oryzias latipes ENSORLG00000017515 I 0.700
ENSPANG00000008140 Papio anubis ENSPANG00000008140 I 0.700
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.700
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.700
RUNX3 Ochotona princeps ENSOPRG00000011273 I 0.700
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.700
RUNX3 Macaca mulatta ENSMMUG00000002420 I 0.700
Runx3 Mus musculus ENSMUSG00000070691 D 0.700
RUNX3 Oryctolagus cuniculus ENSOCUG00000017751 I 0.700
RUNX3 Otolemur garnettii ENSOGAG00000025633 I 0.700
RUNX3 Pan troglodytes ENSPTRG00000000351 I 0.700
Runx3 Rattus norvegicus ENSRNOG00000054217 I 0.700
TC006542 Tribolium castaneum TC006542 I 0.700
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.700
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.700
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.700
RUNX3 Gorilla gorilla ENSGGOG00000004848 I 0.700
ENSMEUG00000014419 Macropus eugenii ENSMEUG00000014419 I 0.700
ENSSTOG00000022471 Ictidomys tridecemlineatus ENSSTOG00000022471 I 0.700
RUNX3 Tursiops truncatus ENSTTRG00000009396 I 0.700
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.700
CpipJ_CPIJ006369 Culex pipiens CpipJ_CPIJ006369 I 0.700
CLEC011116 Cimex lectularius CLEC011116 I 0.700