SPL6 (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT1G69170 T322391_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.899 0.773
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.888 0.667
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.888 0.667
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.888 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G69170.1 SBP 124 198

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL11 Arabidopsis thaliana AT1G27360 D 0.000
SPL10 Arabidopsis thaliana AT1G27370 D 0.000
Ca_08506 Cicer arietinum Ca_08506 I 0.000
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.000
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.000
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.000
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.000
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.000
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.000
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.000
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.000
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.000
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.000
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.000
Bo3g141480 Brassica oleracea Bo3g141480 I 0.000
Bo5g051970 Brassica oleracea Bo5g051970 I 0.000
Bo5g051980 Brassica oleracea Bo5g051980 I 0.000
Bo7g049940 Brassica oleracea Bo7g049940 I 0.000
Bo7g049950 Brassica oleracea Bo7g049950 I 0.000
Bra010949 Brassica rapa Bra010949 I 0.000
Bra030040 Brassica rapa Bra030040 I 0.000
Bra030041 Brassica rapa Bra030041 I 0.000
Bra032822 Brassica rapa Bra032822 I 0.000
Bra032823 Brassica rapa Bra032823 I 0.000
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.000