SPL6 (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT1G69170 T322391_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.899 0.773
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.888 0.667
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.888 0.667
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.888 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G69170.1 SBP 124 198

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.982
Pm030597 Prunus mume Pm030597 I 0.982
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.982
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.981
MDP0000171877 Malus domestica MDP0000171877 I 0.979
MDP0000246046 Malus domestica MDP0000246046 I 0.979
Bra038324 Brassica rapa Bra038324 I 0.978
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.977
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.977
Bo2g062840 Brassica oleracea Bo2g062840 I 0.977
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.974
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.974
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.974
MDP0000119458 Malus domestica MDP0000119458 I 0.973
MDP0000193702 Malus domestica MDP0000193702 I 0.973
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.969
Pm025028 Prunus mume Pm025028 I 0.969
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.969
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.969
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.969
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.969
MDP0000589558 Malus domestica MDP0000589558 I 0.969
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.969
Ca_24655 Cicer arietinum Ca_24655 I 0.966
Bo6g108620 Brassica oleracea Bo6g108620 N 0.966
Bra004363 Brassica rapa Bra004363 N 0.966
TCM_011483 Theobroma cacao TCM_011483 I 0.965
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.962
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.959
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.958
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.958
Cla018827 Citrullus lanatus Cla018827 I 0.957
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.956
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.955
Cla019331 Citrullus lanatus Cla019331 I 0.955
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.955
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.955
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.955
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.955
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.954
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.954
TCM_014330 Theobroma cacao TCM_014330 I 0.954
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.954
SPL19 Oryza sativa OS11G0496600 I 0.954
MDP0000146640 Malus domestica MDP0000146640 I 0.954
30174.m009082 Ricinus communis 30174.m009082 I 0.954
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.954
MDP0000778465 Malus domestica MDP0000778465 I 0.954
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.954
Ca_19449 Cicer arietinum Ca_19449 I 0.954
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.954
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.954
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.954
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.953
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.953
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.953
30138.m003942 Ricinus communis 30138.m003942 I 0.953
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.953
F775_02791 Aegilops tauschii F775_02791 I 0.953
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.953
PK03565.1 Cannabis sativa PK03565.1 I 0.952
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.952
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.952
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.952
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.951
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.951
PK17790.1 Cannabis sativa PK17790.1 I 0.951
Si010262m.g Setaria italica Si010262m.g I 0.951
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.950
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.950
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.949
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.949
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.949
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.948
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.945
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.945
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.945
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.944
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.944
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.944
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.944
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.944
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.944
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.944
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.943
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.942
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.942
Si001804m.g Setaria italica Si001804m.g I 0.942
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.941
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.941
Cla021411 Citrullus lanatus Cla021411 I 0.940
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.940
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.940
Si026656m.g Setaria italica Si026656m.g I 0.939
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.939
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.938
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.937
OB04G27960 Oryza brachyantha OB04G27960 I 0.936
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.935
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.935
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.935
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.935
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.935
SPL7 Oryza sativa OS04G0551500 I 0.935
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.935
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.935
OBART04G20940 Oryza barthii OBART04G20940 I 0.935
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.935
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.934
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.933
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.932
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.931
Si032170m.g Setaria italica Si032170m.g I 0.930
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.929
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.927
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.927
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.926
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.925
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.925
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.924
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.924
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.924
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.923
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.923
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.923
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.922
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.922
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.922
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.922
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.922
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.922
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.922
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.922
OBART07G15570 Oryza barthii OBART07G15570 I 0.922
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.922
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.922
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.921
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.921
Cla001541 Citrullus lanatus Cla001541 I 0.920
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.920
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.920
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.920
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.919
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.919
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.919
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.919
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.918
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.918
Ca_10879 Cicer arietinum Ca_10879 I 0.918
30174.m008805 Ricinus communis 30174.m008805 I 0.918
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.916
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.916
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.916
Bo3g042890 Brassica oleracea Bo3g042890 I 0.916
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.916
TCM_005620 Theobroma cacao TCM_005620 I 0.915
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.915
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.915
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.915
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.915
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.914
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.914
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.914
Bra021880 Brassica rapa Bra021880 I 0.914
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.914
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.913
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.913
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.913
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.913
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.913
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.913
Si013747m.g Setaria italica Si013747m.g N 0.913
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.912
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.912
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.911
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.911
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.911
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.911
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.911
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.910
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.910
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.910
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.909
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.909
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.909
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.909
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.908
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.908
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.907
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.906
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.906
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.905
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.905
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.905
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.905
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.905
Pm014154 Prunus mume Pm014154 I 0.905
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.905
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.905
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.905
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.905
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.905
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.903
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.903
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.903
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.903
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.903
Si013151m.g Setaria italica Si013151m.g I 0.903
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.903
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.902
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.902
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.901
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.901
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.900
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.900
Pm010075 Prunus mume Pm010075 I 0.900
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.899
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.899
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.898
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.898
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.898
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.898
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.898
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.898
F775_27970 Aegilops tauschii F775_27970 I 0.898
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.898
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.898
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.896
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.896
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.896
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.896
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.896
MDP0000297978 Malus domestica MDP0000297978 I 0.895
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.895
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.895
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.895
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.895
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.895
Pm002693 Prunus mume Pm002693 I 0.895
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.895
Pm007035 Prunus mume Pm007035 I 0.894
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.894
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.894
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.894
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.894
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.894
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.894
OBART08G20320 Oryza barthii OBART08G20320 I 0.894
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.894
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.894
SPL15 Oryza indica BGIOSGA028994 I 0.894
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.894
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.894
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.893
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.893
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.893
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.892
MDP0000142582 Malus domestica MDP0000142582 N 0.892
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I 0.892
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.892
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I 0.892
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.892
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.890
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.890
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.890
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.890
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.890
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.890
SPL5 Arabidopsis thaliana AT3G15270 D 0.888
Cla009788 Citrullus lanatus Cla009788 I 0.887
OS01G0922600 Oryza sativa OS01G0922600 I 0.887