BRADI2G59110 (Brachypodium distachyon)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 BRADI2G59110 T322491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.958 0.760
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.895 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.891 0.640
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G59110.1 SBP 68 142

Links

Other SBP family TFs
Other Brachypodium distachyon TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.980
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.979
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.979
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.979
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.979
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.979
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.979
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.979
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.979
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.978
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.975
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.975
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.973
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.973
OBART01G42150 Oryza barthii OBART01G42150 I 0.972
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.972
OS01G0922600 Oryza sativa OS01G0922600 I 0.971
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.969
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.969
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.969
Si001804m.g Setaria italica Si001804m.g I 0.969
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.968
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.967
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.966
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.965
TCM_008671 Theobroma cacao TCM_008671 I 0.965
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.964
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.964
Si026656m.g Setaria italica Si026656m.g I 0.964
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.963
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.962
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.962
PK19500.1 Cannabis sativa PK19500.1 I 0.962
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.961
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.961
Cla019579 Citrullus lanatus Cla019579 I 0.961
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.961
Ca_05711 Cicer arietinum Ca_05711 I 0.960
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.960
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.960
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.959
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.959
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.959
Bo9g097630 Brassica oleracea Bo9g097630 I 0.959
PK02140.1 Cannabis sativa PK02140.1 I 0.959
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.959
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.959
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.959
Bo3g024180 Brassica oleracea Bo3g024180 I 0.958
SPL13A Arabidopsis thaliana AT5G50670 D 0.958
SPL13A Arabidopsis thaliana AT5G50570 I 0.958
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.958
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.958
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.958
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.958
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.958
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.958
SPL19 Oryza sativa OS11G0496600 I 0.958
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.958
Cla002666 Citrullus lanatus Cla002666 I 0.957
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.957
Bra022766 Brassica rapa Bra022766 I 0.957
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.957
Pm024528 Prunus mume Pm024528 I 0.957
29929.m004627 Ricinus communis 29929.m004627 I 0.957
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.957
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.957
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.957
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.957
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.956
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.956
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.956
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.954
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.954
Ca_01426 Cicer arietinum Ca_01426 I 0.954
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.954
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.954
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.954
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.954
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.954
TCM_014668 Theobroma cacao TCM_014668 I 0.953
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.951
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.951
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.951
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.950
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.949
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.948
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.948
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.946
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.946
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.946
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.945
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.945
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.945
SPL16 Oryza sativa OS08G0531600 I 0.942
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.942
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.942
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.942
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.942
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.942
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.942
Cla001541 Citrullus lanatus Cla001541 I 0.942
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.941
Pm025028 Prunus mume Pm025028 I 0.940
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.940
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.940
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.940
TCM_011483 Theobroma cacao TCM_011483 I 0.940
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.940
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.938
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.936
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.936
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.936
Bo3g042890 Brassica oleracea Bo3g042890 I 0.935
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.935
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.933
30147.m014478 Ricinus communis 30147.m014478 I 0.933
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.932
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.932
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.931
Bo6g031220 Brassica oleracea Bo6g031220 I 0.931
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.931
Bra039656 Brassica rapa Bra039656 I 0.931
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.930
Ca_24733 Cicer arietinum Ca_24733 I 0.927
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.927
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.927
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.926
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.926
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.925
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.923
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.923
Si013747m.g Setaria italica Si013747m.g N 0.923
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.922
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.922
MDP0000119458 Malus domestica MDP0000119458 I 0.921
MDP0000193702 Malus domestica MDP0000193702 I 0.921
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.920
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.920
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.920
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.920
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.919
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.919
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.918
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.918
Ca_19449 Cicer arietinum Ca_19449 I 0.918
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.918
Cla018827 Citrullus lanatus Cla018827 I 0.918
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.918
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.918
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.918
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.918
MDP0000146640 Malus domestica MDP0000146640 I 0.917
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.917
MDP0000778465 Malus domestica MDP0000778465 I 0.917
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.916
30138.m003942 Ricinus communis 30138.m003942 I 0.916
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.915
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.915
Si013151m.g Setaria italica Si013151m.g I 0.915
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.915
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.915
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.915
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.915
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.914
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.914
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.914
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.914
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.914
30174.m009082 Ricinus communis 30174.m009082 I 0.914
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.914
Cla019331 Citrullus lanatus Cla019331 I 0.914
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.914
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.914
Cla004156 Citrullus lanatus Cla004156 I 0.914
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.914
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.914
TCM_014330 Theobroma cacao TCM_014330 I 0.914
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.913
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.913
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.913
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.912
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.912
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.912
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.912
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.911
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.911
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.910
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.910
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.910
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.910
OBART09G15750 Oryza barthii OBART09G15750 I 0.910
SPL18 Oryza sativa OS09G0507100 I 0.910
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.909
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.909
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.909
MDP0000263766 Malus domestica MDP0000263766 I 0.909
Pm016138 Prunus mume Pm016138 I 0.909
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.909
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.909
Cla020006 Citrullus lanatus Cla020006 I 0.908
mgf003797m Mimulus guttatus mgf003797m I 0.908
mgf010913m Mimulus guttatus mgf010913m I 0.908
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.908
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.907
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.907
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.907
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.907
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.907
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.907
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.907
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.907
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.907
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.907
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.907
F775_27970 Aegilops tauschii F775_27970 I 0.907
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.907
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.907
OBART08G20320 Oryza barthii OBART08G20320 I 0.907
SPL15 Oryza indica BGIOSGA028994 I 0.907
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.907
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.906
PK17790.1 Cannabis sativa PK17790.1 I 0.906
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.906
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.905
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.905
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.905
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.905
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.905
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.904
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.903
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.903
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.902
Bra027265 Brassica rapa Bra027265 I 0.902
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.902
Bo5g127310 Brassica oleracea Bo5g127310 I 0.902
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.901
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.900
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.899
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.898
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.896
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.895
MDP0000176265 Malus domestica MDP0000176265 I 0.895
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.895
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.895
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.895
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.894
Pm007035 Prunus mume Pm007035 I 0.894
SELMODRAFT_28597 Selaginella moellendorffii SELMODRAFT_28597 I 0.894
SELMODRAFT_79699 Selaginella moellendorffii SELMODRAFT_79699 I 0.894
SPL6 Arabidopsis thaliana AT1G69170 I 0.893
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.893
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.893
MDP0000861601 Malus domestica MDP0000861601 I 0.892
F775_00761 Aegilops tauschii F775_00761 I 0.892
MDP0000156994 Malus domestica MDP0000156994 I 0.892
SPL4 Arabidopsis thaliana AT1G53160 D 0.891
gw1.47.180.1 Physcomitrella patens gw1.47.180.1 I 0.891
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.891
PK14243.1 Cannabis sativa PK14243.1 N 0.891
Bra038101 Brassica rapa Bra038101 I 0.891
TCM_029832 Theobroma cacao TCM_029832 I 0.890
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.890
28211.m000132 Ricinus communis 28211.m000132 I 0.890
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.890
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.889
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.888
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.888
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.888
Sb07g026220 Sorghum bicolor Sb07g026220 N 0.887
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.887
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.887
Cla017596 Citrullus lanatus Cla017596 I 0.887
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.886
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.886
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.886