OBART01G42150 (Oryza barthii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 OBART01G42150 T322772_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.952 0.726
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G42150.1 SBP 3 76

Links

Other SBP family TFs
Other Oryza barthii TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.979
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.979
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.979
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.979
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.979
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.979
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.979
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.979
OS01G0922600 Oryza sativa OS01G0922600 I 0.978
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.976
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.972
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.971
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.970
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.968
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.968
Si001804m.g Setaria italica Si001804m.g I 0.968
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.968
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.966
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.965
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.965
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.963
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.962
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.962
TCM_008671 Theobroma cacao TCM_008671 I 0.962
PK19500.1 Cannabis sativa PK19500.1 I 0.959
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.959
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.959
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.959
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.958
Ca_05711 Cicer arietinum Ca_05711 I 0.957
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.957
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.956
PK02140.1 Cannabis sativa PK02140.1 I 0.956
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.956
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.955
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.955
Si026656m.g Setaria italica Si026656m.g I 0.955
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.955
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.954
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.954
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.954
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.954
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.954
Cla002666 Citrullus lanatus Cla002666 I 0.954
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.954
Pm024528 Prunus mume Pm024528 I 0.954
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.953
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.953
Bo9g097630 Brassica oleracea Bo9g097630 I 0.953
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.953
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.952
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.952
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.952
SPL13A Arabidopsis thaliana AT5G50570 I 0.952
SPL13A Arabidopsis thaliana AT5G50670 D 0.952
Bo3g024180 Brassica oleracea Bo3g024180 I 0.952
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.952
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.951
SPL19 Oryza sativa OS11G0496600 I 0.951
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.951
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.950
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.950
Ca_01426 Cicer arietinum Ca_01426 I 0.950
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.950
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.950
Bra022766 Brassica rapa Bra022766 I 0.950
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.950
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.950
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.950
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.949
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.948
Cla019579 Citrullus lanatus Cla019579 I 0.947
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.947
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.947
29929.m004627 Ricinus communis 29929.m004627 I 0.945
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.944
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.944
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.942
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.942
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.942
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.941
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.941
TCM_014668 Theobroma cacao TCM_014668 I 0.941
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.941
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.941
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.941
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.941
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.937
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.937
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.937
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.937
Cla001541 Citrullus lanatus Cla001541 I 0.937
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.937
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.937
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.934
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.932
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.932
SPL16 Oryza sativa OS08G0531600 I 0.932
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.932
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.931
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.931
Pm025028 Prunus mume Pm025028 I 0.931
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.931
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.931
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.930
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.929
Bo3g042890 Brassica oleracea Bo3g042890 I 0.929
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.928
30147.m014478 Ricinus communis 30147.m014478 I 0.928
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.928
TCM_011483 Theobroma cacao TCM_011483 I 0.927
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.927
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.926
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.926
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.923
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.921
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.921
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.920
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.920
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.920
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.919
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.919
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.916
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.916
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.915
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.910
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.910
Si013747m.g Setaria italica Si013747m.g N 0.910
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.910
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.909
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.909
Bra039656 Brassica rapa Bra039656 I 0.908
Bo6g031220 Brassica oleracea Bo6g031220 I 0.908
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.908
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.908
MDP0000193702 Malus domestica MDP0000193702 I 0.908
MDP0000119458 Malus domestica MDP0000119458 I 0.908
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.907
Ca_24733 Cicer arietinum Ca_24733 I 0.906
Cla020006 Citrullus lanatus Cla020006 I 0.906
Cla018827 Citrullus lanatus Cla018827 I 0.905
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.904
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.904
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.903
MDP0000263766 Malus domestica MDP0000263766 I 0.903
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.903
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.902
mgf010913m Mimulus guttatus mgf010913m I 0.902
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.902
30174.m009082 Ricinus communis 30174.m009082 I 0.902
mgf003797m Mimulus guttatus mgf003797m I 0.902
TCM_014330 Theobroma cacao TCM_014330 I 0.902
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.902
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.901
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.901
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.901
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.901
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.901
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.901
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.901
Ca_19449 Cicer arietinum Ca_19449 I 0.901
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.901
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.901
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.901
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.901
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.901
Cla019331 Citrullus lanatus Cla019331 I 0.901
OBART09G15750 Oryza barthii OBART09G15750 I 0.900
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.900
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.900
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.900
SPL18 Oryza sativa OS09G0507100 I 0.900
MDP0000778465 Malus domestica MDP0000778465 I 0.900
MDP0000146640 Malus domestica MDP0000146640 I 0.900
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.899
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.898
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.898
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.898
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.898
Pm016138 Prunus mume Pm016138 I 0.898
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.897
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.897
Si013151m.g Setaria italica Si013151m.g I 0.897
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.897
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.897
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.897
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.897
30138.m003942 Ricinus communis 30138.m003942 I 0.897
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.897
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.896
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.896
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.895
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.895
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.894
Cla002263 Citrullus lanatus Cla002263 I 0.894
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.893
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.893
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.893
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.893
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.893
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.893
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.892
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.892
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.892
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.892
Cla004156 Citrullus lanatus Cla004156 I 0.892
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.892
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.892
F775_27970 Aegilops tauschii F775_27970 I 0.892
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.892
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.892
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.892
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.892
PK17790.1 Cannabis sativa PK17790.1 I 0.891
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.891
F775_00761 Aegilops tauschii F775_00761 I 0.890
Bo5g127310 Brassica oleracea Bo5g127310 I 0.890
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.890
Bra027265 Brassica rapa Bra027265 I 0.890
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.890
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.890
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.889
MDP0000176265 Malus domestica MDP0000176265 I 0.889
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.889
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.888
SPL15 Oryza indica BGIOSGA028994 I 0.888
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.888
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.888
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.888
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.888
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.888
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.888
OBART08G20320 Oryza barthii OBART08G20320 I 0.888
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.888
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.888
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.888
Pm007035 Prunus mume Pm007035 I 0.887
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.887
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.887
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.887
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.886