LjSGA_061446.1 (Lotus japonicus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 LjSGA_061446.1 T323725_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.890 0.768
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_061446.1 SBP 1 69

Links

Other SBP family TFs
Other Lotus japonicus TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.982
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.971
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.969
Ca_24733 Cicer arietinum Ca_24733 I 0.956
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.950
SPL19 Oryza sativa OS11G0496600 I 0.950
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.950
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.950
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.947
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.945
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.945
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.945
MDP0000119458 Malus domestica MDP0000119458 I 0.945
Si001804m.g Setaria italica Si001804m.g I 0.945
MDP0000193702 Malus domestica MDP0000193702 I 0.945
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.943
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.941
Cla001541 Citrullus lanatus Cla001541 I 0.941
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.937
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.937
Si026656m.g Setaria italica Si026656m.g I 0.937
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.935
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.935
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.932
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.932
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.932
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.932
Pm025028 Prunus mume Pm025028 I 0.931
Bo3g042890 Brassica oleracea Bo3g042890 I 0.930
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.929
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.929
Ca_19449 Cicer arietinum Ca_19449 I 0.929
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.929
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.929
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.929
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.929
TCM_011483 Theobroma cacao TCM_011483 I 0.928
MDP0000146640 Malus domestica MDP0000146640 I 0.928
MDP0000778465 Malus domestica MDP0000778465 I 0.928
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.927
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.927
Cla018827 Citrullus lanatus Cla018827 I 0.927
30138.m003942 Ricinus communis 30138.m003942 I 0.927
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.926
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.926
30174.m009082 Ricinus communis 30174.m009082 I 0.926
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.926
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.926
Cla019331 Citrullus lanatus Cla019331 I 0.926
TCM_014330 Theobroma cacao TCM_014330 I 0.926
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.926
PK17790.1 Cannabis sativa PK17790.1 I 0.926
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.926
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.925
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.925
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.924
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.924
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.924
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.923
SPL6 Arabidopsis thaliana AT1G69170 I 0.923
MDP0000142582 Malus domestica MDP0000142582 N 0.923
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.923
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.922
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.922
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.922
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.921
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.921
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.921
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.921
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.921
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.920
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.920
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.920
Pm030597 Prunus mume Pm030597 I 0.919
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.919
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.919
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.918
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.918
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.918
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.916
MDP0000171877 Malus domestica MDP0000171877 I 0.916
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.916
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.916
MDP0000246046 Malus domestica MDP0000246046 I 0.916
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.915
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.914
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.914
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.913
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.913
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.913
TCM_014668 Theobroma cacao TCM_014668 I 0.911
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.911
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.910
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.910
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.910
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.910
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.910
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.910
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.910
PK19500.1 Cannabis sativa PK19500.1 I 0.910
OBART01G42150 Oryza barthii OBART01G42150 I 0.910
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.910
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.909
TCM_017247 Theobroma cacao TCM_017247 N 0.909
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.909
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.909
OS01G0922600 Oryza sativa OS01G0922600 I 0.908
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.908
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.908
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.907
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.907
Si013747m.g Setaria italica Si013747m.g N 0.907
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.907
29929.m004627 Ricinus communis 29929.m004627 I 0.906
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.906
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.906
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.905
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.905
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.905
TCM_008671 Theobroma cacao TCM_008671 I 0.905
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.904
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.903
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.903
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.901
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.901
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.901
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.901
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.901
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.900
Bra038324 Brassica rapa Bra038324 I 0.900
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.900
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.899
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.899
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.899
Pm024528 Prunus mume Pm024528 I 0.899
Cla002666 Citrullus lanatus Cla002666 I 0.899
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.898
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.898
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.898
Cla004156 Citrullus lanatus Cla004156 I 0.897
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.897
Bo2g062840 Brassica oleracea Bo2g062840 I 0.897
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.897
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.896
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.896
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.896
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.896
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.896
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.896
PK02140.1 Cannabis sativa PK02140.1 I 0.894
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.894
Ca_05711 Cicer arietinum Ca_05711 I 0.893
Bo9g097630 Brassica oleracea Bo9g097630 I 0.893
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.893
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.893
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.893
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.892
Ca_01426 Cicer arietinum Ca_01426 I 0.892
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.892
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.892
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.892
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.892
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.891
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.891
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.891
MDP0000589558 Malus domestica MDP0000589558 I 0.891
SPL13A Arabidopsis thaliana AT5G50570 I 0.890
Cla019579 Citrullus lanatus Cla019579 I 0.890
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.890
Bo3g024180 Brassica oleracea Bo3g024180 I 0.890
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.890
SPL13A Arabidopsis thaliana AT5G50670 D 0.890
Aquca_040_00115 Aquilegia coerulea Aquca_040_00115 N 0.888
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.888
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.888
Bra022766 Brassica rapa Bra022766 I 0.887
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.887
Ca_24655 Cicer arietinum Ca_24655 I 0.886