MDP0000171877 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000171877 T323565_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.893 0.640
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.893 0.640
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.893 0.640
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000171877 SBP 162 236

Links

Other SBP family TFs
Other Malus domestica TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000246046 Malus domestica MDP0000246046 I 0.986
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.984
Pm030597 Prunus mume Pm030597 I 0.984
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.983
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.982
SPL6 Arabidopsis thaliana AT1G69170 I 0.979
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.979
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.979
Bo2g062840 Brassica oleracea Bo2g062840 I 0.979
Bra038324 Brassica rapa Bra038324 I 0.978
MDP0000193702 Malus domestica MDP0000193702 I 0.976
MDP0000119458 Malus domestica MDP0000119458 I 0.976
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.975
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.975
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.975
Ca_24655 Cicer arietinum Ca_24655 I 0.969
Bo6g108620 Brassica oleracea Bo6g108620 N 0.967
Bra004363 Brassica rapa Bra004363 N 0.967
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.965
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.965
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.963
MDP0000589558 Malus domestica MDP0000589558 I 0.963
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.963
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.963
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.963
Pm025028 Prunus mume Pm025028 I 0.960
TCM_011483 Theobroma cacao TCM_011483 I 0.960
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.956
PK03565.1 Cannabis sativa PK03565.1 I 0.956
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.956
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.955
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.955
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.953
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.952
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.952
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.952
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.952
F775_02791 Aegilops tauschii F775_02791 I 0.952
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.951
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.951
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.950
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.950
Si010262m.g Setaria italica Si010262m.g I 0.949
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.947
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.947
SPL19 Oryza sativa OS11G0496600 I 0.947
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.946
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.946
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.946
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.946
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.946
Cla019331 Citrullus lanatus Cla019331 I 0.946
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.945
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.945
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.945
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.945
Ca_19449 Cicer arietinum Ca_19449 I 0.945
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.945
TCM_014330 Theobroma cacao TCM_014330 I 0.945
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.945
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.945
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.945
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.945
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.945
MDP0000778465 Malus domestica MDP0000778465 I 0.944
30138.m003942 Ricinus communis 30138.m003942 I 0.944
30174.m009082 Ricinus communis 30174.m009082 I 0.944
MDP0000146640 Malus domestica MDP0000146640 I 0.944
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.943
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.941
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.941
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.941
Cla018827 Citrullus lanatus Cla018827 I 0.941
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.941
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.940
PK17790.1 Cannabis sativa PK17790.1 I 0.940
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.940
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.940
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.939
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.939
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.938
Si001804m.g Setaria italica Si001804m.g I 0.936
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.936
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.936
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.936
Cla021411 Citrullus lanatus Cla021411 I 0.935
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.935
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.935
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.935
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.935
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.934
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.934
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.933
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.933
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.933
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.932
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.929
Si026656m.g Setaria italica Si026656m.g I 0.929
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.929
OBART04G20940 Oryza barthii OBART04G20940 I 0.929
OB04G27960 Oryza brachyantha OB04G27960 I 0.929
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.929
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.929
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.929
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.929
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.929
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.929
SPL7 Oryza sativa OS04G0551500 I 0.929
OBART07G15570 Oryza barthii OBART07G15570 I 0.927
Bo3g042890 Brassica oleracea Bo3g042890 I 0.927
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.927
Si032170m.g Setaria italica Si032170m.g I 0.927
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.927
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.927
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.927
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.927
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.926
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.926
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.925
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.923
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.922
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.921
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.921
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.920
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.920
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.920
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.920
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.919
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.919
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.919
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.919
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.918
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.916
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.916
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.916
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.915
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.914
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.914
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.914
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.913
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.913
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.913
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.912
Ca_10879 Cicer arietinum Ca_10879 I 0.911
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.911
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.911
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.911
30174.m008805 Ricinus communis 30174.m008805 I 0.911
Pm014154 Prunus mume Pm014154 I 0.910
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.910
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.910
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.910
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.910
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.910
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.910
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.910
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.909
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.909
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.909
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.909
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.909
TCM_005620 Theobroma cacao TCM_005620 I 0.908
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.908
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.908
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.908
Bra021880 Brassica rapa Bra021880 I 0.908
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.908
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.908
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.908
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.908
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.906
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.906
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.906
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.906
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.906
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.906
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.905
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.905
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.904
Si013151m.g Setaria italica Si013151m.g I 0.904
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.904
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.904
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.904
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.904
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.903
Pm010075 Prunus mume Pm010075 I 0.903
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.903
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.903
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.903
Cla001541 Citrullus lanatus Cla001541 I 0.902
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.902
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.901
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.901
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.900
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.900
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.900
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.899
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.899
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.899
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.899
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.899
F775_27970 Aegilops tauschii F775_27970 I 0.899
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.899
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.898
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.898
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.898
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.898
Si013747m.g Setaria italica Si013747m.g N 0.898
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.898
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.898
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.897
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.896
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.896
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.896
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.896
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.896
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.896
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.895
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.895
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.895
OBART08G20320 Oryza barthii OBART08G20320 I 0.895
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.895
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.895
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.895
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.895
SPL15 Oryza indica BGIOSGA028994 I 0.895
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.895
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.894
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.894
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.894
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.894
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.894
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.894
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.894
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.894
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.894
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.894
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.894
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.894
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.894
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.893
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.893
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.893
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.893
SPL5 Arabidopsis thaliana AT3G15270 D 0.893
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.892
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.890
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.890
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.890
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.889
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.889
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.888
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.887
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.887
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.887
Pm002693 Prunus mume Pm002693 I 0.887
MDP0000297978 Malus domestica MDP0000297978 I 0.887
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.886
MDP0000142582 Malus domestica MDP0000142582 N 0.886
TCM_031595 Theobroma cacao TCM_031595 I 0.886