Lus10016275.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10016275.g T323537_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.893 0.800
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.893 0.800
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.893 0.800
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.886 0.720
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016275 SBP 67 141

Links

Other SBP family TFs
Other Linum usitatissimum TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.983
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.963
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.962
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.962
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.962
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.962
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.962
MDP0000297978 Malus domestica MDP0000297978 I 0.962
Pm002693 Prunus mume Pm002693 I 0.962
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.960
Si030195m.g Setaria italica Si030195m.g I 0.957
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.957
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.957
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.956
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.955
PK18312.1 Cannabis sativa PK18312.1 I 0.954
29269.m000250 Ricinus communis 29269.m000250 I 0.952
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.952
TCM_024873 Theobroma cacao TCM_024873 I 0.952
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.952
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.951
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.950
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.949
F775_10743 Aegilops tauschii F775_10743 I 0.948
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.948
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.948
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.946
Ca_07299 Cicer arietinum Ca_07299 I 0.946
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.945
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.945
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.945
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.945
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.944
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.944
mgf001295m Mimulus guttatus mgf001295m I 0.944
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.943
OB09G21350 Oryza brachyantha OB09G21350 N 0.943
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.942
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.942
mgf012995m Mimulus guttatus mgf012995m I 0.942
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.942
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.942
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.942
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.942
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.942
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.942
OBART09G14800 Oryza barthii OBART09G14800 I 0.942
Pm007035 Prunus mume Pm007035 I 0.941
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.941
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.940
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.940
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.939
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.938
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.936
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.936
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.936
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.936
SPL14 Oryza sativa OS08G0509600 I 0.936
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.936
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.936
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.935
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.932
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.932
Si013870m.g Setaria italica Si013870m.g I 0.931
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.931
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.931
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.930
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.930
OB08G26920 Oryza brachyantha OB08G26920 I 0.930
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.930
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.929
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.929
Pm030597 Prunus mume Pm030597 I 0.929
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.928
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.928
Bo6g108620 Brassica oleracea Bo6g108620 N 0.928
Bra004363 Brassica rapa Bra004363 N 0.928
MDP0000246046 Malus domestica MDP0000246046 I 0.926
MDP0000171877 Malus domestica MDP0000171877 I 0.926
SPL6 Arabidopsis thaliana AT1G69170 I 0.925
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.923
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.923
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.922
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.922
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.922
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.921
OS09G0491532 Oryza sativa OS09G0491532 I 0.921
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.921
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.921
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.921
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.921
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.921
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.921
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.921
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.921
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.921
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.921
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.921
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.920
Ca_24655 Cicer arietinum Ca_24655 I 0.920
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.920
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.919
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.919
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.919
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.919
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.918
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.918
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.916
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.916
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.915
MDP0000589558 Malus domestica MDP0000589558 I 0.914
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.914
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.914
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.914
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.914
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.914
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.914
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.914
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.914
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.913
F775_27970 Aegilops tauschii F775_27970 I 0.913
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.913
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.913
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.913
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.913
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.913
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.913
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.913
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.913
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.913
Pm025028 Prunus mume Pm025028 I 0.912
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.912
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.912
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.912
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.912
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.911
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.911
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.911
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.911
TCM_031595 Theobroma cacao TCM_031595 I 0.911
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.911
Si013151m.g Setaria italica Si013151m.g I 0.911
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.911
Bo2g062840 Brassica oleracea Bo2g062840 I 0.910
PK11310.1 Cannabis sativa PK11310.1 I 0.910
Bra038324 Brassica rapa Bra038324 I 0.910
28211.m000132 Ricinus communis 28211.m000132 I 0.910
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.909
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.909
TCM_011483 Theobroma cacao TCM_011483 I 0.909
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.909
MDP0000861601 Malus domestica MDP0000861601 I 0.908
MDP0000156994 Malus domestica MDP0000156994 I 0.908
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.907
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.907
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.906
OS01G0922600 Oryza sativa OS01G0922600 I 0.906
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.905
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.905
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.905
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.905
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.904
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.903
Si010262m.g Setaria italica Si010262m.g I 0.903
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.902
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.902
OBART08G20320 Oryza barthii OBART08G20320 I 0.902
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.902
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.902
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.902
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.902
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.902
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.902
SPL15 Oryza indica BGIOSGA028994 I 0.902
SPL19 Oryza sativa OS11G0496600 I 0.900
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.900
F775_02791 Aegilops tauschii F775_02791 I 0.899
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.899
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.899
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.899
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.899
Si026656m.g Setaria italica Si026656m.g I 0.899
Si001804m.g Setaria italica Si001804m.g I 0.899
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.899
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.899
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.899
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.898
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.897
OBART01G42150 Oryza barthii OBART01G42150 I 0.897
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.897
mgf025134m Mimulus guttatus mgf025134m I 0.897
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.897
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.896
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.896
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.896
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.896
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.896
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.896
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.895
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.895
MDP0000119458 Malus domestica MDP0000119458 I 0.894
MDP0000193702 Malus domestica MDP0000193702 I 0.894
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.894
Cla017596 Citrullus lanatus Cla017596 I 0.894
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.894
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.893
SPL9 Arabidopsis thaliana AT2G42200 D 0.893
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.893
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.892
Si034095m.g Setaria italica Si034095m.g I 0.892
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.892
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.892
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.892
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.892
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.892
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.892
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.892
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.892
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.892
PK03565.1 Cannabis sativa PK03565.1 I 0.891
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.891
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.890
GRMZM2G138421 Zea mays GRMZM2G138421 I 0.890
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.890
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.890
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.890
Bra004674 Brassica rapa Bra004674 I 0.889
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.889
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.889
Bo4g015800 Brassica oleracea Bo4g015800 I 0.889
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.889
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.888
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.887
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.887
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.887
Bra016891 Brassica rapa Bra016891 I 0.887
Bo4g191350 Brassica oleracea Bo4g191350 I 0.887
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.886
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.886
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.886
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.886
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.886
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.886