Sb02g028420 (Sorghum bicolor)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Sb02g028420 T322993_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.924 0.760
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.912 0.667
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.896 0.707
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.896 0.707
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.896 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb02g028420.1 SBP 72 146

Links

Other SBP family TFs
Other Sorghum bicolor TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.984
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.984
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.984
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.984
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.984
OBART09G14800 Oryza barthii OBART09G14800 I 0.984
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.984
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.983
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.982
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.982
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.981
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.979
F775_10743 Aegilops tauschii F775_10743 I 0.977
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.977
Si030195m.g Setaria italica Si030195m.g I 0.977
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.977
OB09G21350 Oryza brachyantha OB09G21350 N 0.973
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.971
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.971
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.971
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.971
SPL14 Oryza sativa OS08G0509600 I 0.971
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.971
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.971
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.970
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.969
Si013870m.g Setaria italica Si013870m.g I 0.969
OS09G0491532 Oryza sativa OS09G0491532 I 0.969
OB08G26920 Oryza brachyantha OB08G26920 I 0.969
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.969
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.969
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.968
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.968
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.965
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.964
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.964
PK18312.1 Cannabis sativa PK18312.1 I 0.964
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.964
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.964
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.963
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.963
TCM_024873 Theobroma cacao TCM_024873 I 0.963
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.963
29269.m000250 Ricinus communis 29269.m000250 I 0.963
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.960
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.959
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.959
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.958
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.958
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.958
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.958
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.955
Ca_07299 Cicer arietinum Ca_07299 I 0.954
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.952
mgf012995m Mimulus guttatus mgf012995m I 0.951
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.951
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.949
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.947
Pm002693 Prunus mume Pm002693 I 0.947
MDP0000297978 Malus domestica MDP0000297978 I 0.947
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.947
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.945
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.945
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.945
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.938
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.938
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.938
mgf001295m Mimulus guttatus mgf001295m I 0.937
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.936
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.935
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.935
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.935
Pm007035 Prunus mume Pm007035 I 0.933
PK11310.1 Cannabis sativa PK11310.1 I 0.931
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.924
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.924
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.923
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.922
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.922
mgf025134m Mimulus guttatus mgf025134m I 0.922
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.922
Si034095m.g Setaria italica Si034095m.g I 0.922
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.922
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.920
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.920
OLONG_015903 Oryza longistaminata OLONG_015903 N 0.919
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.919
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.919
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.918
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.918
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.918
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.918
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.917
Traes_7DS_E2A582546 Triticum aestivum Traes_7DS_E2A582546 N 0.915
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.914
OBART03G39900 Oryza barthii OBART03G39900 I 0.914
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.914
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.914
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.914
OB03G47050 Oryza brachyantha OB03G47050 I 0.914
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.914
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.914
SPL6 Oryza sativa OS03G0833300 I 0.914
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.914
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.914
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.914
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.914
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.914
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.912
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.912
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.912
30076.m004574 Ricinus communis 30076.m004574 I 0.912
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.912
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.912
Ca_03548 Cicer arietinum Ca_03548 I 0.912
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.912
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.912
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.912
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.912
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.912
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.912
TCM_004922 Theobroma cacao TCM_004922 I 0.912
PK06791.1 Cannabis sativa PK06791.1 D 0.912
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.911
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.911
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.911
GRMZM2G460544 Zea mays GRMZM2G460544 N 0.911
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.911
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.911
F775_31139 Aegilops tauschii F775_31139 I 0.911
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.911
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.911
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.911
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.911
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.910
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.910
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.910
mgf009459m Mimulus guttatus mgf009459m I 0.910
MDP0000919693 Malus domestica MDP0000919693 I 0.909
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.908
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.908
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.908
TCM_031595 Theobroma cacao TCM_031595 I 0.908
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.907
28211.m000132 Ricinus communis 28211.m000132 I 0.906
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.906
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.905
Pm017778 Prunus mume Pm017778 I 0.904
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.904
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.904
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.904
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.903
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.903
Bo4g005730 Brassica oleracea Bo4g005730 I 0.903
Bra041037 Brassica rapa Bra041037 I 0.903
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.903
29889.m003388 Ricinus communis 29889.m003388 I 0.903
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.902
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.902
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.902
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.902
MDP0000919694 Malus domestica MDP0000919694 I 0.901
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.901
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.901
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.901
OB08G27190 Oryza brachyantha OB08G27190 I 0.901
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.901
TCM_021482 Theobroma cacao TCM_021482 I 0.900
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.900
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.900
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.900
MDP0000180408 Malus domestica MDP0000180408 I 0.900
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.900
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.900
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.900
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.899
MDP0000861601 Malus domestica MDP0000861601 I 0.899
MDP0000156994 Malus domestica MDP0000156994 I 0.899
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.897
Ca_10879 Cicer arietinum Ca_10879 I 0.896
SPL1 Arabidopsis thaliana AT2G47070 D 0.896
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.896
MDP0000262141 Malus domestica MDP0000262141 I 0.896
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.894
OBART07G15570 Oryza barthii OBART07G15570 I 0.894
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.894
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.894
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.894
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.894
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.894
TCM_005620 Theobroma cacao TCM_005620 I 0.894
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.894
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.894
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.894
Bra016891 Brassica rapa Bra016891 I 0.891
Bo4g191350 Brassica oleracea Bo4g191350 I 0.891
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.890
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.890
30174.m008805 Ricinus communis 30174.m008805 I 0.890
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.889
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.889
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.888
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.888
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.887