Pavir.Fb01946 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Fb01946 T323631_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.940 0.760
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.923 0.693
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.916 0.693
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.916 0.693
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.916 0.693
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.895 0.653
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.887 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01946.1.p SBP 85 159
Pavir.Fb01946.2.p SBP 85 159
Pavir.Fb01946.5.p SBP 42 73

Links

Other SBP family TFs
Other Panicum virgatum TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si013870m.g Setaria italica Si013870m.g I 0.983
OB08G26920 Oryza brachyantha OB08G26920 I 0.980
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.978
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.978
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.978
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.978
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.978
SPL14 Oryza sativa OS08G0509600 I 0.978
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.978
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.977
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.977
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.976
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.975
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.974
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.974
Si030195m.g Setaria italica Si030195m.g I 0.973
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.973
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.973
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.971
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.970
OBART09G14800 Oryza barthii OBART09G14800 I 0.969
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.969
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.969
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.969
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.969
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.969
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.969
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.968
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.968
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.967
PK18312.1 Cannabis sativa PK18312.1 I 0.966
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.966
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.965
29269.m000250 Ricinus communis 29269.m000250 I 0.965
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.965
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.965
TCM_024873 Theobroma cacao TCM_024873 I 0.965
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.965
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.965
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.963
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.963
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.963
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.963
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.961
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.960
F775_10743 Aegilops tauschii F775_10743 I 0.960
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.960
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.960
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.959
Ca_07299 Cicer arietinum Ca_07299 I 0.958
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.957
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.957
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.956
mgf012995m Mimulus guttatus mgf012995m I 0.956
PK11310.1 Cannabis sativa PK11310.1 I 0.955
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.954
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.950
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.950
Pm002693 Prunus mume Pm002693 I 0.950
MDP0000297978 Malus domestica MDP0000297978 I 0.950
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.949
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.949
OB09G21350 Oryza brachyantha OB09G21350 N 0.948
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.947
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.946
OS09G0491532 Oryza sativa OS09G0491532 I 0.946
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.945
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.943
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.943
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.941
mgf001295m Mimulus guttatus mgf001295m I 0.940
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.940
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.940
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.939
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.938
Pm007035 Prunus mume Pm007035 I 0.937
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.936
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.935
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.932
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.931
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.931
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.931
Si034095m.g Setaria italica Si034095m.g I 0.931
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.930
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.930
SPL6 Oryza sativa OS03G0833300 I 0.930
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.930
OB03G47050 Oryza brachyantha OB03G47050 I 0.930
OBART03G39900 Oryza barthii OBART03G39900 I 0.930
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.930
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.930
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.930
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.930
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.930
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.930
mgf025134m Mimulus guttatus mgf025134m I 0.930
MDP0000919693 Malus domestica MDP0000919693 I 0.929
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.929
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.928
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.928
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.928
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.928
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.928
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.928
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.928
F775_31139 Aegilops tauschii F775_31139 I 0.928
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.928
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.928
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.928
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.928
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.927
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.927
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.926
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.926
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.926
MDP0000919694 Malus domestica MDP0000919694 I 0.926
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.925
Pm017778 Prunus mume Pm017778 I 0.925
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.925
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.924
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.924
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.924
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.923
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.923
30076.m004574 Ricinus communis 30076.m004574 I 0.923
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.923
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.923
PK06791.1 Cannabis sativa PK06791.1 D 0.923
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.923
29889.m003388 Ricinus communis 29889.m003388 I 0.923
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.923
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.923
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.923
Ca_03548 Cicer arietinum Ca_03548 I 0.923
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.923
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.923
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.923
OB08G27190 Oryza brachyantha OB08G27190 I 0.923
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.923
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.923
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.922
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.922
TCM_021482 Theobroma cacao TCM_021482 I 0.922
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.922
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.922
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.922
MDP0000262141 Malus domestica MDP0000262141 I 0.922
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.922
MDP0000180408 Malus domestica MDP0000180408 I 0.922
TCM_004922 Theobroma cacao TCM_004922 I 0.922
Bra041037 Brassica rapa Bra041037 I 0.921
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.921
Bo4g005730 Brassica oleracea Bo4g005730 I 0.921
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.921
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.921
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.921
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.921
OB04G27960 Oryza brachyantha OB04G27960 I 0.920
mgf009459m Mimulus guttatus mgf009459m I 0.920
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.919
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.919
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.919
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.919
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.919
OBART04G20940 Oryza barthii OBART04G20940 I 0.919
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.919
SPL7 Oryza sativa OS04G0551500 I 0.919
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.919
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.919
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.918
TCM_005620 Theobroma cacao TCM_005620 I 0.918
TCM_031595 Theobroma cacao TCM_031595 I 0.918
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.918
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.918
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.918
Ca_10879 Cicer arietinum Ca_10879 I 0.918
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.918
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.918
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.918
28211.m000132 Ricinus communis 28211.m000132 I 0.916
SPL1 Arabidopsis thaliana AT2G47070 D 0.916
30174.m008805 Ricinus communis 30174.m008805 I 0.915
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.915
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.915
OBART08G20010 Oryza barthii OBART08G20010 N 0.914
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.914
OLONG_020138 Oryza longistaminata OLONG_020138 N 0.914
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.914
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.913
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.913
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.911
MDP0000156994 Malus domestica MDP0000156994 I 0.910
MDP0000861601 Malus domestica MDP0000861601 I 0.910
MDP0000180409 Malus domestica MDP0000180409 I 0.909
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.907
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.907
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.906
Pm008475 Prunus mume Pm008475 I 0.906
Pm008474 Prunus mume Pm008474 I 0.906
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.906
Cla021411 Citrullus lanatus Cla021411 I 0.906
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.905
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.904
GRMZM2G460544 Zea mays GRMZM2G460544 N 0.903
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.902
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.902
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.901
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.901
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.901
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.901
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.900
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.900
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.900
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.899
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.899
Bra038101 Brassica rapa Bra038101 I 0.898
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.898
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.898
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.898
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.898
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.898
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.897
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.897
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.897
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.896
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.896
SPL4 Arabidopsis thaliana AT1G53160 D 0.895
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.895
Bra015732 Brassica rapa Bra015732 I 0.895
Bo6g120690 Brassica oleracea Bo6g120690 I 0.895
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.895
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.895
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.895
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.895
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.895
Bo5g127310 Brassica oleracea Bo5g127310 I 0.894
Bra027265 Brassica rapa Bra027265 I 0.894
Ca_24655 Cicer arietinum Ca_24655 I 0.893
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.892
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.891
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.891
Ca_16243 Cicer arietinum Ca_16243 I 0.891
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.891
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.891
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.891
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.891
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.891
Ca_01036 Cicer arietinum Ca_01036 I 0.889
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.889
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.889
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.889
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.889
Bo2g091010 Brassica oleracea Bo2g091010 I 0.889
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.888
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.888
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.888
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.888
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.888
Ca_18591 Cicer arietinum Ca_18591 I 0.888
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.888
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.888
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.888
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.888
MDP0000589558 Malus domestica MDP0000589558 I 0.887
SPL12 Arabidopsis thaliana AT3G60030 D 0.887
MDP0000158607 Malus domestica MDP0000158607 I 0.887
TCM_029832 Theobroma cacao TCM_029832 I 0.886