BRADI3G40030 (Brachypodium distachyon)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 BRADI3G40030 T322495_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.937 0.733
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.916 0.680
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.916 0.680
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.916 0.680
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.914 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G40030.1 SBP 81 155

Links

Other SBP family TFs
Other Brachypodium distachyon TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OB08G26920 Oryza brachyantha OB08G26920 I 0.976
Si013870m.g Setaria italica Si013870m.g I 0.976
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.976
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.976
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.976
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.975
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.975
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.975
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.975
SPL14 Oryza sativa OS08G0509600 I 0.975
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.975
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.975
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.975
PK18312.1 Cannabis sativa PK18312.1 I 0.975
29269.m000250 Ricinus communis 29269.m000250 I 0.974
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.974
TCM_024873 Theobroma cacao TCM_024873 I 0.974
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.973
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.973
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.973
Si030195m.g Setaria italica Si030195m.g I 0.973
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.973
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.973
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.973
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.973
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.973
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.973
OBART09G14800 Oryza barthii OBART09G14800 I 0.972
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.972
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.972
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.972
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.972
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.972
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.972
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.971
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.970
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.970
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.969
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.969
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.969
Ca_07299 Cicer arietinum Ca_07299 I 0.968
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.968
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.968
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.967
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.967
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.966
F775_10743 Aegilops tauschii F775_10743 I 0.965
mgf012995m Mimulus guttatus mgf012995m I 0.964
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.963
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.963
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.962
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.960
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.960
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.960
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.958
MDP0000297978 Malus domestica MDP0000297978 I 0.958
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.958
Pm002693 Prunus mume Pm002693 I 0.958
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.956
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.955
mgf001295m Mimulus guttatus mgf001295m I 0.955
OS09G0491532 Oryza sativa OS09G0491532 I 0.954
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.954
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.952
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.951
PK11310.1 Cannabis sativa PK11310.1 I 0.951
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.951
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.949
OB09G21350 Oryza brachyantha OB09G21350 N 0.947
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.944
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.944
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.942
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.942
Pm007035 Prunus mume Pm007035 I 0.941
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.941
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.939
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.939
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.937
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.937
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.936
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.933
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.932
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.930
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.928
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.928
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.927
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.927
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.926
MDP0000919693 Malus domestica MDP0000919693 I 0.925
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.924
OB03G47050 Oryza brachyantha OB03G47050 I 0.924
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.924
SPL6 Oryza sativa OS03G0833300 I 0.924
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.924
OBART03G39900 Oryza barthii OBART03G39900 I 0.924
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.924
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.924
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.924
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.924
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.924
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.924
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.923
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.923
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.923
Si034095m.g Setaria italica Si034095m.g I 0.923
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.922
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.922
Bra041037 Brassica rapa Bra041037 I 0.922
Bo4g005730 Brassica oleracea Bo4g005730 I 0.922
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.922
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.922
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.921
F775_31139 Aegilops tauschii F775_31139 I 0.921
mgf025134m Mimulus guttatus mgf025134m I 0.921
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.921
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.921
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.921
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.921
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.921
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.921
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.921
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.920
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.919
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.919
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.919
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.919
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.919
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.919
MDP0000919694 Malus domestica MDP0000919694 I 0.918
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.918
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.918
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.918
MDP0000180408 Malus domestica MDP0000180408 I 0.918
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.918
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.918
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.918
Pm017778 Prunus mume Pm017778 I 0.917
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.917
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.916
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.916
SPL1 Arabidopsis thaliana AT2G47070 D 0.916
OB08G27190 Oryza brachyantha OB08G27190 I 0.916
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.916
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.916
29889.m003388 Ricinus communis 29889.m003388 I 0.916
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.916
TCM_021482 Theobroma cacao TCM_021482 I 0.916
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.916
OB04G27960 Oryza brachyantha OB04G27960 I 0.915
TCM_004922 Theobroma cacao TCM_004922 I 0.915
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.915
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.915
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.914
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.914
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.914
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.914
PK06791.1 Cannabis sativa PK06791.1 D 0.914
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.914
Ca_03548 Cicer arietinum Ca_03548 I 0.914
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.914
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.914
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.914
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.914
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.914
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.914
30076.m004574 Ricinus communis 30076.m004574 I 0.914
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.913
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.913
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.913
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.913
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.913
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.913
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.913
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.913
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.913
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.913
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.913
SPL7 Oryza sativa OS04G0551500 I 0.913
OBART04G20940 Oryza barthii OBART04G20940 I 0.913
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.912
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.911
MDP0000262141 Malus domestica MDP0000262141 I 0.911
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.911
mgf009459m Mimulus guttatus mgf009459m I 0.911
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.910
TCM_005620 Theobroma cacao TCM_005620 I 0.910
Ca_10879 Cicer arietinum Ca_10879 I 0.910
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.910
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.910
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.908
mgf001202m Mimulus guttatus mgf001202m I 0.908
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.907
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.907
30174.m008805 Ricinus communis 30174.m008805 I 0.907
TCM_031595 Theobroma cacao TCM_031595 I 0.907
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.907
OBART08G20010 Oryza barthii OBART08G20010 N 0.907
OLONG_020138 Oryza longistaminata OLONG_020138 N 0.907
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.906
30170.m014245 Ricinus communis 30170.m014245 I 0.906
28211.m000132 Ricinus communis 28211.m000132 I 0.906
PK25661.1 Cannabis sativa PK25661.1 I 0.906
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.906
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.906
MDP0000180409 Malus domestica MDP0000180409 I 0.904
Ca_24655 Cicer arietinum Ca_24655 I 0.903
GRMZM2G460544 Zea mays GRMZM2G460544 N 0.903
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.902
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.902
Bra016891 Brassica rapa Bra016891 I 0.901
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.901
Pm008474 Prunus mume Pm008474 I 0.901
Pm008475 Prunus mume Pm008475 I 0.901
Bo4g191350 Brassica oleracea Bo4g191350 I 0.901
MDP0000156994 Malus domestica MDP0000156994 I 0.899
MDP0000861601 Malus domestica MDP0000861601 I 0.899
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.898
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.898
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.898
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.897
Cla021411 Citrullus lanatus Cla021411 I 0.897
MDP0000149339 Malus domestica MDP0000149339 I 0.897
Bo4g015800 Brassica oleracea Bo4g015800 I 0.896
Cla002263 Citrullus lanatus Cla002263 I 0.896
Eucgr.F01828 Eucalyptus grandis Eucgr.F01828 I 0.896
Bra004674 Brassica rapa Bra004674 I 0.896
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.896
MDP0000589558 Malus domestica MDP0000589558 I 0.895
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.894
OLONG_015903 Oryza longistaminata OLONG_015903 N 0.893
F775_27970 Aegilops tauschii F775_27970 I 0.893
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.893
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.893
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.893
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.893
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.893
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.893
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.892
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.891
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.891
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.890
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.890
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.889
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.888
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.888
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.888
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.888
Traes_7DS_E2A582546 Triticum aestivum Traes_7DS_E2A582546 N 0.888
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.887
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.887
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.887
Bra038101 Brassica rapa Bra038101 I 0.887