CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.2636s0004
(
Capsella grandiflora
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Cagra.2636s0004
T323405_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN
NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.976
0.973
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.976
0.973
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.976
0.973
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2636s0004.1.p
SBP
73
147
CQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Capsella grandiflora
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SPL9
Arabidopsis lyrata
scaffold_403069.1
I
0.981
Carubv10023478m.g
Capsella rubella
Carubv10023478m.g
I
0.981
Thhalv10016816m.g
Eutrema salsugineum
Thhalv10016816m.g
I
0.979
SPL9
Arabidopsis thaliana
AT2G42200
D
0.976
Bostr.25993s0559
Boechera stricta
Bostr.25993s0559
I
0.975
Bo4g015800
Brassica oleracea
Bo4g015800
I
0.973
Bra004674
Brassica rapa
Bra004674
I
0.973
Bra016891
Brassica rapa
Bra016891
I
0.968
Bo4g191350
Brassica oleracea
Bo4g191350
I
0.968
Lus10021034.g
Linum usitatissimum
Lus10021034.g
I
0.924
Lus10023818.g
Linum usitatissimum
Lus10023818.g
I
0.924
Pm002693
Prunus mume
Pm002693
I
0.909
MDP0000297978
Malus domestica
MDP0000297978
I
0.909
Aquca_009_00161
Aquilegia coerulea
Aquca_009_00161
I
0.909
PRUPE_ppa007056mg
Prunus persica
PRUPE_ppa007056mg
I
0.909
PRUPE_ppa021582mg
Prunus persica
PRUPE_ppa021582mg
I
0.909
Lus10012020.g
Linum usitatissimum
Lus10012020.g
I
0.905
Lus10016275.g
Linum usitatissimum
Lus10016275.g
I
0.905
Ca_24655
Cicer arietinum
Ca_24655
I
0.904
Bra004363
Brassica rapa
Bra004363
N
0.904
Bo6g108620
Brassica oleracea
Bo6g108620
N
0.903
gene22660-v1.0-hybrid
Fragaria vesca
gene22660-v1.0-hybrid
I
0.901
orange1.1g009653m.g
Citrus sinensis
orange1.1g009653m.g
I
0.894
Ciclev10031270m.g
Citrus clementina
Ciclev10031270m.g
I
0.894
MDP0000589558
Malus domestica
MDP0000589558
I
0.892
PRUPE_ppa017695mg
Prunus persica
PRUPE_ppa017695mg
I
0.892
Pm030597
Prunus mume
Pm030597
I
0.892
Thhalv10018638m.g
Eutrema salsugineum
Thhalv10018638m.g
I
0.891
gene04565-v1.0-hybrid
Fragaria vesca
gene04565-v1.0-hybrid
I
0.891
Carubv10020369m.g
Capsella rubella
Carubv10020369m.g
I
0.891
Cagra.0537s0003
Capsella grandiflora
Cagra.0537s0003
I
0.891
Pavir.J11258
Panicum virgatum
Pavir.J11258
I
0.889
Pavir.Ba01711
Panicum virgatum
Pavir.Ba01711
I
0.889
Si030195m.g
Setaria italica
Si030195m.g
I
0.889
fgenesh1_pg.C_scaffold_2001253
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001253
I
0.887
TCM_024873
Theobroma cacao
TCM_024873
I
0.886
29269.m000250
Ricinus communis
29269.m000250
I
0.886
Eucgr.A02441
Eucalyptus grandis
Eucgr.A02441
I
0.886
VIT_08s0007g06270
Vitis vinifera
VIT_08s0007g06270
I
0.886