gene04565-v1.0-hybrid (Fragaria vesca)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 gene04565-v1.0-hybrid T323478_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.892 0.733
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.890 0.627
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.890 0.627
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.890 0.627
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna04565.1-v1.0-hybrid SBP 164 238

Links

Other SBP family TFs
Other Fragaria vesca TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm030597 Prunus mume Pm030597 I 0.985
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.985
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.984
MDP0000246046 Malus domestica MDP0000246046 I 0.983
MDP0000171877 Malus domestica MDP0000171877 I 0.983
SPL6 Arabidopsis thaliana AT1G69170 I 0.981
Bo2g062840 Brassica oleracea Bo2g062840 I 0.981
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.981
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.981
Bra038324 Brassica rapa Bra038324 I 0.980
MDP0000193702 Malus domestica MDP0000193702 I 0.977
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.977
MDP0000119458 Malus domestica MDP0000119458 I 0.977
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.977
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.977
Ca_24655 Cicer arietinum Ca_24655 I 0.971
Bra004363 Brassica rapa Bra004363 N 0.970
Bo6g108620 Brassica oleracea Bo6g108620 N 0.970
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.968
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.968
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.966
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.966
MDP0000589558 Malus domestica MDP0000589558 I 0.966
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.966
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.966
TCM_011483 Theobroma cacao TCM_011483 I 0.963
Pm025028 Prunus mume Pm025028 I 0.963
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.960
PK03565.1 Cannabis sativa PK03565.1 I 0.960
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.960
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.959
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.958
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.958
F775_02791 Aegilops tauschii F775_02791 I 0.958
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.958
Si010262m.g Setaria italica Si010262m.g I 0.957
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.957
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.955
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.955
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.954
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.954
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.954
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.954
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.952
SPL19 Oryza sativa OS11G0496600 I 0.952
30138.m003942 Ricinus communis 30138.m003942 I 0.952
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.951
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.951
Cla019331 Citrullus lanatus Cla019331 I 0.951
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.951
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.951
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.951
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.951
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.951
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.950
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.950
TCM_014330 Theobroma cacao TCM_014330 I 0.950
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.949
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.949
MDP0000778465 Malus domestica MDP0000778465 I 0.949
Ca_19449 Cicer arietinum Ca_19449 I 0.949
MDP0000146640 Malus domestica MDP0000146640 I 0.949
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.949
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.949
30174.m009082 Ricinus communis 30174.m009082 I 0.949
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.949
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.949
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.947
Cla018827 Citrullus lanatus Cla018827 I 0.947
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.947
PK17790.1 Cannabis sativa PK17790.1 I 0.946
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.945
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.945
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.944
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.944
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.944
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.944
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.944
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.943
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.943
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.943
Cla021411 Citrullus lanatus Cla021411 I 0.941
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.940
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.940
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.940
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.940
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.939
SPL7 Oryza sativa OS04G0551500 I 0.939
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.939
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.939
Si026656m.g Setaria italica Si026656m.g I 0.939
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.939
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.939
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.939
OBART04G20940 Oryza barthii OBART04G20940 I 0.939
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.939
OB04G27960 Oryza brachyantha OB04G27960 I 0.939
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.939
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.939
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.939
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.938
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.936
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.936
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.936
Si001804m.g Setaria italica Si001804m.g I 0.936
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.934
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.934
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.933
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.932
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.932
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.931
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.930
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.930
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.930
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.930
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.928
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.928
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.928
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.926
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.926
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.925
Si032170m.g Setaria italica Si032170m.g I 0.925
OBART07G15570 Oryza barthii OBART07G15570 I 0.925
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.925
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.925
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.925
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.925
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.924
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.923
Ca_10879 Cicer arietinum Ca_10879 I 0.923
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.922
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.922
Bo3g042890 Brassica oleracea Bo3g042890 I 0.921
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.921
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.921
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.920
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.919
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.919
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.919
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.919
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.919
30174.m008805 Ricinus communis 30174.m008805 I 0.919
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.919
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.918
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.918
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.918
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.917
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.917
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.917
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.917
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.917
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.916
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.916
TCM_005620 Theobroma cacao TCM_005620 I 0.916
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.916
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.916
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.916
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.913
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.913
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.912
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.912
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.912
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.912
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.911
Bra021880 Brassica rapa Bra021880 I 0.911
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.910
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.910
Cla001541 Citrullus lanatus Cla001541 I 0.910
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.909
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.909
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.909
Pm010075 Prunus mume Pm010075 I 0.909
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.909
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.909
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.909
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.908
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.908
Pm014154 Prunus mume Pm014154 I 0.908
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.908
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.907
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.907
Si013747m.g Setaria italica Si013747m.g N 0.906
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.906
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.906
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.906
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.906
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.906
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.905
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.905
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.905
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.905
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.905
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.905
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.904
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.904
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.903
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.902
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.902
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.902
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.902
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.901
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.901
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.901
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.901
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.901
MDP0000297978 Malus domestica MDP0000297978 I 0.901
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.901
Pm002693 Prunus mume Pm002693 I 0.901
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.901
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.900
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.899
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.899
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.899
Si013151m.g Setaria italica Si013151m.g I 0.899
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.899
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.899
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.898
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.898
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.897
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.897
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.897
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.895
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.894
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.894
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.894
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.894
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.894
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.894
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.894
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.894
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.894
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.894
Pm007035 Prunus mume Pm007035 I 0.894
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.894
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.894
MDP0000142582 Malus domestica MDP0000142582 N 0.894
F775_27970 Aegilops tauschii F775_27970 I 0.894
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.894
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.893
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.893
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.893
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.892
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.892
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.892
Cla009788 Citrullus lanatus Cla009788 I 0.892
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.891
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.891
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.891
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.891
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.891
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.891
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.891
SPL5 Arabidopsis thaliana AT3G15270 D 0.890
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.889
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.889
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.889
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.889
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.889
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I 0.889
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.889
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I 0.889
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.889
SPL15 Oryza indica BGIOSGA028994 I 0.889
OBART08G20320 Oryza barthii OBART08G20320 I 0.889
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.889
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.888
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.888
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.886
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.886
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.886