Bra038324 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra038324 T322482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.905 0.773
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.898 0.680
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.898 0.680
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.898 0.680
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038324.1-P SBP 90 164

Links

Other SBP family TFs
Other Brassica rapa TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g062840 Brassica oleracea Bo2g062840 I 0.984
Pm030597 Prunus mume Pm030597 I 0.981
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.981
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.981
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.980
MDP0000246046 Malus domestica MDP0000246046 I 0.978
SPL6 Arabidopsis thaliana AT1G69170 I 0.978
MDP0000171877 Malus domestica MDP0000171877 I 0.978
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.975
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.975
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.973
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.973
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.973
MDP0000119458 Malus domestica MDP0000119458 I 0.971
MDP0000193702 Malus domestica MDP0000193702 I 0.971
Bo6g108620 Brassica oleracea Bo6g108620 N 0.964
Ca_24655 Cicer arietinum Ca_24655 I 0.964
Bra004363 Brassica rapa Bra004363 N 0.964
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.961
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.961
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.961
F775_02791 Aegilops tauschii F775_02791 I 0.961
Si010262m.g Setaria italica Si010262m.g I 0.960
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.960
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.960
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.960
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.960
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.960
MDP0000589558 Malus domestica MDP0000589558 I 0.960
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.960
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.960
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.960
TCM_011483 Theobroma cacao TCM_011483 I 0.957
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.957
Pm025028 Prunus mume Pm025028 I 0.957
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.955
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.953
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.951
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.949
PK03565.1 Cannabis sativa PK03565.1 I 0.949
Cla021411 Citrullus lanatus Cla021411 I 0.948
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.947
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.947
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.947
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.947
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.947
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.946
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.944
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.943
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.943
OBART04G20940 Oryza barthii OBART04G20940 I 0.943
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.943
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.943
OB04G27960 Oryza brachyantha OB04G27960 I 0.943
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.943
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.943
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.943
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.943
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.943
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.943
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.943
SPL7 Oryza sativa OS04G0551500 I 0.943
SPL19 Oryza sativa OS11G0496600 I 0.942
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.942
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.942
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.941
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.941
TCM_014330 Theobroma cacao TCM_014330 I 0.941
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.941
Cla019331 Citrullus lanatus Cla019331 I 0.941
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.941
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.940
Ca_19449 Cicer arietinum Ca_19449 I 0.940
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.940
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.940
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.940
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.940
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.940
30174.m009082 Ricinus communis 30174.m009082 I 0.940
30138.m003942 Ricinus communis 30138.m003942 I 0.939
MDP0000778465 Malus domestica MDP0000778465 I 0.939
MDP0000146640 Malus domestica MDP0000146640 I 0.939
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.938
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.938
Cla018827 Citrullus lanatus Cla018827 I 0.937
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.937
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.936
PK17790.1 Cannabis sativa PK17790.1 I 0.936
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.936
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.936
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.935
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.935
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.935
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.935
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.934
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.934
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.934
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.933
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.933
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.932
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.932
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.931
Si032170m.g Setaria italica Si032170m.g I 0.931
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.930
OBART07G15570 Oryza barthii OBART07G15570 I 0.930
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.930
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.930
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.930
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.930
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.930
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.930
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.930
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.929
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.929
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.929
30174.m008805 Ricinus communis 30174.m008805 I 0.929
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.929
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.929
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.929
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.929
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.928
Ca_10879 Cicer arietinum Ca_10879 I 0.928
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.928
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.928
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.928
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.927
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.926
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.926
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.926
TCM_005620 Theobroma cacao TCM_005620 I 0.926
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.926
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.926
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.924
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.924
Si001804m.g Setaria italica Si001804m.g I 0.924
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.924
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.924
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.924
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.924
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.924
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.924
Si026656m.g Setaria italica Si026656m.g I 0.923
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.923
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.923
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.921
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.921
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.921
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.920
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.920
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.919
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.919
Bra021880 Brassica rapa Bra021880 I 0.917
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.916
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.916
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.916
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.914
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.914
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.914
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.914
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.913
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.912
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.912
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.912
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.912
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.912
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.912
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.912
Pm010075 Prunus mume Pm010075 I 0.912
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.912
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.912
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.911
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.911
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.910
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.910
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.910
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.910
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.909
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.909
Pm014154 Prunus mume Pm014154 I 0.909
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.906
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.905
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.905
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.905
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.903
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.903
Cla009788 Citrullus lanatus Cla009788 I 0.901
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.901
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.900
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.900
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.899
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.899
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.899
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.898
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I 0.898
MDP0000865739 Malus domestica MDP0000865739 I 0.898
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.898
SPL5 Arabidopsis thaliana AT3G15270 D 0.898
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I 0.898
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.898
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.898
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.898
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.897
MDP0000149339 Malus domestica MDP0000149339 I 0.897
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.896
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.895
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.895
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.895
Bo3g042890 Brassica oleracea Bo3g042890 I 0.894
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.894
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.894
TCM_024873 Theobroma cacao TCM_024873 I 0.894
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.894
29269.m000250 Ricinus communis 29269.m000250 I 0.894
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.893
Cla001541 Citrullus lanatus Cla001541 I 0.893
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.892
TCM_031595 Theobroma cacao TCM_031595 I 0.891
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.891
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.891
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.891
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.890
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.890
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.890
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.890
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.890
PK18312.1 Cannabis sativa PK18312.1 I 0.889
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.889
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.889
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.889
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.889
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.889
Si013747m.g Setaria italica Si013747m.g N 0.889
Cla002263 Citrullus lanatus Cla002263 I 0.889
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.889
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.889
PK25661.1 Cannabis sativa PK25661.1 I 0.888
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.888
30170.m014245 Ricinus communis 30170.m014245 I 0.888
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.888
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.888
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.888
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.888
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.888
Bo6g120690 Brassica oleracea Bo6g120690 I 0.888
Bra015732 Brassica rapa Bra015732 I 0.888
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.888
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.888
mgf001202m Mimulus guttatus mgf001202m I 0.887
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.887
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.887
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.886
28211.m000132 Ricinus communis 28211.m000132 I 0.886
MDP0000156994 Malus domestica MDP0000156994 I 0.886
mgf001295m Mimulus guttatus mgf001295m I 0.886
MDP0000861601 Malus domestica MDP0000861601 I 0.886
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.885