evm.TU.supercontig_27.40 (Carica papaya)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 evm.TU.supercontig_27.40 T323470_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.914 0.720
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.914 0.720
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.914 0.720
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.898 0.747
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_27.40 SBP 61 135

Links

Other SBP family TFs
Other Carica papaya TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.977
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.975
30190.m011329 Ricinus communis 30190.m011329 I 0.973
PK26639.1 Cannabis sativa PK26639.1 I 0.969
Cla009788 Citrullus lanatus Cla009788 I 0.969
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.968
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.967
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.967
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.965
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.963
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.963
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.959
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.958
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.957
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.957
29983.m003158 Ricinus communis 29983.m003158 I 0.955
Ca_10879 Cicer arietinum Ca_10879 I 0.954
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.953
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.952
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.952
30174.m008805 Ricinus communis 30174.m008805 I 0.952
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.952
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.952
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.952
Ca_00320 Cicer arietinum Ca_00320 I 0.950
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.950
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.950
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.950
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.950
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.950
TCM_005620 Theobroma cacao TCM_005620 I 0.949
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.949
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.949
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.949
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.947
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.947
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.947
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.947
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.946
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.945
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.945
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.944
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.943
Pm014154 Prunus mume Pm014154 I 0.943
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.943
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.943
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.943
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.943
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.943
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.942
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.942
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.938
mgf011616m Mimulus guttatus mgf011616m I 0.937
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.937
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.937
Si010262m.g Setaria italica Si010262m.g I 0.936
Cla023735 Citrullus lanatus Cla023735 I 0.936
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.936
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.936
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.935
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.934
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.934
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.934
Pm011381 Prunus mume Pm011381 I 0.934
MDP0000158607 Malus domestica MDP0000158607 I 0.934
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.934
Pm010075 Prunus mume Pm010075 I 0.933
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.933
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.931
Si032170m.g Setaria italica Si032170m.g I 0.931
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.931
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.930
Ca_16243 Cicer arietinum Ca_16243 I 0.930
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.930
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.930
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.930
MDP0000861601 Malus domestica MDP0000861601 I 0.929
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.929
MDP0000156994 Malus domestica MDP0000156994 I 0.929
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.928
Cla021411 Citrullus lanatus Cla021411 I 0.927
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.927
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.927
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.927
TCM_029832 Theobroma cacao TCM_029832 I 0.925
Bra021880 Brassica rapa Bra021880 I 0.925
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.924
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.924
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.924
OB04G27960 Oryza brachyantha OB04G27960 I 0.924
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.924
F775_02791 Aegilops tauschii F775_02791 I 0.924
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.923
mgf025134m Mimulus guttatus mgf025134m I 0.923
OBART04G20940 Oryza barthii OBART04G20940 I 0.923
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.923
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.923
SPL7 Oryza sativa OS04G0551500 I 0.923
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.923
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.923
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.923
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.923
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.923
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.923
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.921
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.921
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.920
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.920
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.919
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.919
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.916
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.915
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.915
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.915
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.915
Ca_24655 Cicer arietinum Ca_24655 I 0.914
SPL3 Arabidopsis thaliana AT2G33810 D 0.914
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.914
Bo3g027460 Brassica oleracea Bo3g027460 I 0.914
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.914
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.914
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.912
MDP0000589558 Malus domestica MDP0000589558 I 0.911
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.911
Pm017778 Prunus mume Pm017778 I 0.911
OBART07G15570 Oryza barthii OBART07G15570 I 0.910
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.910
Bra005470 Brassica rapa Bra005470 I 0.910
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.910
MDP0000865739 Malus domestica MDP0000865739 I 0.910
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.910
Bo4g042390 Brassica oleracea Bo4g042390 I 0.910
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.910
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.910
mgf016414m Mimulus guttatus mgf016414m I 0.909
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.909
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.909
TCM_008150 Theobroma cacao TCM_008150 I 0.909
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.907
Bra022954 Brassica rapa Bra022954 I 0.907
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.905
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.905
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.904
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.903
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.902
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.901
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.901
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.901
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.900
MDP0000262141 Malus domestica MDP0000262141 I 0.900
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.899
PK22320.1 Cannabis sativa PK22320.1 D 0.898
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.898
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.895
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.895
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.894
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.894
mgf000195m Mimulus guttatus mgf000195m I 0.892
mgf017351m Mimulus guttatus mgf017351m I 0.891
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.890
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.890
Bra038324 Brassica rapa Bra038324 I 0.889
F775_00761 Aegilops tauschii F775_00761 I 0.888
Cla002263 Citrullus lanatus Cla002263 I 0.888
Cla020006 Citrullus lanatus Cla020006 I 0.888
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.888
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.888
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.888
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.886
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.886
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.886
Bo2g062840 Brassica oleracea Bo2g062840 I 0.886