cassava46941.m1 (Manihot esculenta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 cassava46941.m1 T323248_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.896 0.787
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.896 0.787
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.896 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava46941.m1 SBP 56 130

Links

Other SBP family TFs
Other Manihot esculenta TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.958
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.954
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.953
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.952
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.948
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.947
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.945
PK26639.1 Cannabis sativa PK26639.1 I 0.945
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.939
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.938
Cla009788 Citrullus lanatus Cla009788 I 0.936
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.933
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.933
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.932
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.930
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.930
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.929
cassava45584.m1 Manihot esculenta cassava45584.m1 N 0.928
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.926
Cla023735 Citrullus lanatus Cla023735 I 0.926
Pm014154 Prunus mume Pm014154 I 0.926
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.926
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.925
Pm011381 Prunus mume Pm011381 I 0.924
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.924
MDP0000158607 Malus domestica MDP0000158607 I 0.924
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.923
Cla020006 Citrullus lanatus Cla020006 I 0.923
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.923
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.920
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.920
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.919
MDP0000861601 Malus domestica MDP0000861601 I 0.919
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.919
MDP0000156994 Malus domestica MDP0000156994 I 0.919
Ca_16243 Cicer arietinum Ca_16243 I 0.919
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.916
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.915
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.915
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.915
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.915
TCM_029832 Theobroma cacao TCM_029832 I 0.914
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.914
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.913
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.912
Gorai.002G068300 Gossypium raimondii Gorai.002G068300 I 0.909
Bra021880 Brassica rapa Bra021880 I 0.909
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.909
AMTR_s00001p00058370 Amborella trichopoda AMTR_s00001p00058370 N 0.909
Pm010075 Prunus mume Pm010075 I 0.906
29983.m003158 Ricinus communis 29983.m003158 I 0.906
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.906
Bra005470 Brassica rapa Bra005470 I 0.906
Bo4g042390 Brassica oleracea Bo4g042390 I 0.906
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.903
mgf016414m Mimulus guttatus mgf016414m I 0.903
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.901
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.900
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.900
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.900
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.899
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.898
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.898
Si032170m.g Setaria italica Si032170m.g I 0.898
Sb02g034180 Sorghum bicolor Sb02g034180 N 0.898
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.897
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.897
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.897
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.897
Bo3g027460 Brassica oleracea Bo3g027460 I 0.896
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.896
SPL3 Arabidopsis thaliana AT2G33810 D 0.896
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.895
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.895
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.892
30190.m011329 Ricinus communis 30190.m011329 I 0.892
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.891
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.891
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.891
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.891
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.890
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.890
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.889
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.887
Bra022954 Brassica rapa Bra022954 I 0.886
PK17790.1 Cannabis sativa PK17790.1 I 0.886