CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si026656m.g
(
Setaria italica
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Si026656m.g
T323052_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.949
0.787
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si026656m
SBP
78
152
CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKKSCRKRLDGHNRRRRKP
Links
Other
SBP
family TFs
Other
Setaria italica
TFs
264 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Hb01173
Panicum virgatum
Pavir.Hb01173
I
0.984
Sb05g017510
Sorghum bicolor
Sb05g017510
I
0.979
GSMUA_Achr7G22940_001
Musa acuminata
GSMUA_Achr7G22940_001
I
0.973
GSMUA_AchrUn_randomG05850_001
Musa acuminata
GSMUA_AchrUn_randomG05850_001
I
0.973
GSMUA_Achr9G01380_001
Musa acuminata
GSMUA_Achr9G01380_001
I
0.971
GSMUA_Achr11G19580_001
Musa acuminata
GSMUA_Achr11G19580_001
I
0.970
ORGLA11G0121600
Oryza glaberrima
ORGLA11G0121600
I
0.968
MLOC_52321
Hordeum vulgare
MLOC_52321
I
0.968
SPL19
Oryza sativa
OS11G0496600
I
0.968
LPERR01G36700
Leersia perrieri
LPERR01G36700
I
0.967
Sb03g044160
Sorghum bicolor
Sb03g044160
I
0.967
ONIVA01G48230
Oryza nivara
ONIVA01G48230
I
0.966
ORUFI01G45560
Oryza rufipogon
ORUFI01G45560
I
0.966
OPUNC01G41070
Oryza punctata
OPUNC01G41070
I
0.966
OMERI01G39190
Oryza meridionalis
OMERI01G39190
I
0.966
OGLUM01G46420
Oryza glumaepatula
OGLUM01G46420
I
0.966
ORGLA01G0361700
Oryza glaberrima
ORGLA01G0361700
I
0.966
BGIOSGA005075
Oryza indica
BGIOSGA005075
I
0.966
GLYMA16G05895
Glycine max
GLYMA16G05895
I
0.965
GLYMA19G26390
Glycine max
GLYMA19G26390
I
0.964
GSMUA_AchrUn_randomG21900_001
Musa acuminata
GSMUA_AchrUn_randomG21900_001
I
0.964
BRADI2G59110
Brachypodium distachyon
BRADI2G59110
I
0.964
Gorai.013G095700
Gossypium raimondii
Gorai.013G095700
I
0.962
GSMUA_Achr9G29330_001
Musa acuminata
GSMUA_Achr9G29330_001
I
0.961
Gorai.002G181700
Gossypium raimondii
Gorai.002G181700
I
0.961
GSMUA_Achr4G16050_001
Musa acuminata
GSMUA_Achr4G16050_001
I
0.961
GSMUA_Achr6G27520_001
Musa acuminata
GSMUA_Achr6G27520_001
I
0.961
GSMUA_AchrUn_randomG08380_001
Musa acuminata
GSMUA_AchrUn_randomG08380_001
I
0.959
PK19500.1
Cannabis sativa
PK19500.1
I
0.959
GSMUA_Achr6G06030_001
Musa acuminata
GSMUA_Achr6G06030_001
I
0.959
OS01G0922600
Oryza sativa
OS01G0922600
I
0.959
GSMUA_Achr2G06150_001
Musa acuminata
GSMUA_Achr2G06150_001
I
0.958
MDP0000193702
Malus domestica
MDP0000193702
I
0.958
MDP0000119458
Malus domestica
MDP0000119458
I
0.958
GSMUA_Achr5G25090_001
Musa acuminata
GSMUA_Achr5G25090_001
I
0.957
OMERI11G11920
Oryza meridionalis
OMERI11G11920
I
0.957
Aquca_011_00114
Aquilegia coerulea
Aquca_011_00114
I
0.956
Gorai.008G166000
Gossypium raimondii
Gorai.008G166000
I
0.956
VIT_01s0010g03910
Vitis vinifera
VIT_01s0010g03910
I
0.956
TCM_008671
Theobroma cacao
TCM_008671
I
0.956
OBART01G42150
Oryza barthii
OBART01G42150
I
0.955
GLYMA08G01450
Glycine max
GLYMA08G01450
I
0.954
gene06295-v1.0-hybrid
Fragaria vesca
gene06295-v1.0-hybrid
I
0.953
Eucgr.K02708
Eucalyptus grandis
Eucgr.K02708
I
0.953
Sb02g029300
Sorghum bicolor
Sb02g029300
I
0.953
BRADI4G34667
Brachypodium distachyon
BRADI4G34667
I
0.953
GRMZM2G061734
Zea mays
GRMZM2G061734
I
0.953
LPERR11G11330
Leersia perrieri
LPERR11G11330
I
0.953
cassava42933.valid.m1
Manihot esculenta
cassava42933.valid.m1
I
0.952
cassava6548.valid.m1
Manihot esculenta
cassava6548.valid.m1
I
0.952
29929.m004627
Ricinus communis
29929.m004627
I
0.952
OGLUM08G22810
Oryza glumaepatula
OGLUM08G22810
I
0.952
Gorai.005G164600
Gossypium raimondii
Gorai.005G164600
I
0.952
OMERI06G13610
Oryza meridionalis
OMERI06G13610
I
0.952
SPL16
Oryza sativa
OS08G0531600
I
0.952
orange1.1g021420m.g
Citrus sinensis
orange1.1g021420m.g
I
0.952
Ciclev10032171m.g
Citrus clementina
Ciclev10032171m.g
I
0.952
GRMZM2G371033
Zea mays
GRMZM2G371033
I
0.952
Lus10015764.g
Linum usitatissimum
Lus10015764.g
I
0.951
GRMZM2G106798
Zea mays
GRMZM2G106798
I
0.951
TCM_014668
Theobroma cacao
TCM_014668
I
0.951
evm.TU.supercontig_1141.2
Carica papaya
evm.TU.supercontig_1141.2
I
0.951
Thhalv10013892m.g
Eutrema salsugineum
Thhalv10013892m.g
I
0.950
POPTR_0015s11100
Populus trichocarpa
POPTR_0015s11100
I
0.950
Bostr.15774s0206
Boechera stricta
Bostr.15774s0206
I
0.950
Bo9g097630
Brassica oleracea
Bo9g097630
I
0.950
Ciclev10031834m.g
Citrus clementina
Ciclev10031834m.g
I
0.950
orange1.1g016971m.g
Citrus sinensis
orange1.1g016971m.g
I
0.950
scaffold_801495.1
Arabidopsis lyrata
scaffold_801495.1
I
0.950
Pavir.Ea03909
Panicum virgatum
Pavir.Ea03909
I
0.949
Pm024528
Prunus mume
Pm024528
I
0.949
Cla002666
Citrullus lanatus
Cla002666
I
0.949
SPL13A
Arabidopsis thaliana
AT5G50670
D
0.949
Si001804m.g
Setaria italica
Si001804m.g
I
0.949
PRUPE_ppa006611mg
Prunus persica
PRUPE_ppa006611mg
I
0.949
Pavir.J02262
Panicum virgatum
Pavir.J02262
I
0.949
POPTR_0012s10260
Populus trichocarpa
POPTR_0012s10260
I
0.949
SPL13A
Arabidopsis thaliana
AT5G50570
I
0.949
Cagra.0117s0007
Capsella grandiflora
Cagra.0117s0007
I
0.949
Cucsa.392170
Cucumis sativus
Cucsa.392170
I
0.949
Bo3g024180
Brassica oleracea
Bo3g024180
I
0.949
Carubv10026628m.g
Capsella rubella
Carubv10026628m.g
I
0.949
VIT_17s0000g01260
Vitis vinifera
VIT_17s0000g01260
I
0.948
Gorai.003G102800
Gossypium raimondii
Gorai.003G102800
I
0.948
gene26117-v1.0-hybrid
Fragaria vesca
gene26117-v1.0-hybrid
I
0.948
Eucgr.B00631
Eucalyptus grandis
Eucgr.B00631
I
0.948
ORGLA08G0230100
Oryza glaberrima
ORGLA08G0230100
I
0.948
PRUPE_ppa003644mg
Prunus persica
PRUPE_ppa003644mg
I
0.948
Ca_24733
Cicer arietinum
Ca_24733
I
0.948
Cucsa.054050
Cucumis sativus
Cucsa.054050
I
0.947
Cla004156
Citrullus lanatus
Cla004156
I
0.947
GLYMA05G38180
Glycine max
GLYMA05G38180
I
0.947
PK02140.1
Cannabis sativa
PK02140.1
I
0.947
MTR_8g096780
Medicago truncatula
MTR_8g096780
I
0.947
Ca_05711
Cicer arietinum
Ca_05711
I
0.947
Bra022766
Brassica rapa
Bra022766
I
0.947
AMTR_s00013p00150040
Amborella trichopoda
AMTR_s00013p00150040
I
0.947
SapurV1A.0168s0440
Salix purpurea
SapurV1A.0168s0440
I
0.946
Pm025028
Prunus mume
Pm025028
I
0.946
VIT_14s0068g01780
Vitis vinifera
VIT_14s0068g01780
N
0.945
MTR_3g099080
Medicago truncatula
MTR_3g099080
I
0.945
TCM_011483
Theobroma cacao
TCM_011483
I
0.945
GLYMA04G37391
Glycine max
GLYMA04G37391
I
0.945
GLYMA06G17700
Glycine max
GLYMA06G17700
I
0.945
Ca_01426
Cicer arietinum
Ca_01426
I
0.945
MTR_7g028740
Medicago truncatula
MTR_7g028740
I
0.944
Cucsa.157230
Cucumis sativus
Cucsa.157230
I
0.944
LPERR08G18310
Leersia perrieri
LPERR08G18310
I
0.944
SapurV1A.1018s0120
Salix purpurea
SapurV1A.1018s0120
I
0.943
BRADI3G41250
Brachypodium distachyon
BRADI3G41250
I
0.942
fgenesh1_pg.C_scaffold_2001253
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001253
I
0.942
PK14243.1
Cannabis sativa
PK14243.1
N
0.941
SapurV1A.0173s0270
Salix purpurea
SapurV1A.0173s0270
I
0.940
Eucgr.B03518
Eucalyptus grandis
Eucgr.B03518
I
0.940
Solyc05g012040.2
Solanum lycopersicum
Solyc05g012040.2
I
0.940
PGSC0003DMG400028308
Solanum tuberosum
PGSC0003DMG400028308
I
0.940
ONIVA08G24550
Oryza nivara
ONIVA08G24550
I
0.940
SPL6
Arabidopsis thaliana
AT1G69170
I
0.939
Cla019579
Citrullus lanatus
Cla019579
I
0.939
Lus10000643.g
Linum usitatissimum
Lus10000643.g
I
0.939
gene04565-v1.0-hybrid
Fragaria vesca
gene04565-v1.0-hybrid
I
0.939
gene01338-v1.0-hybrid
Fragaria vesca
gene01338-v1.0-hybrid
I
0.938
SapurV1A.0176s0470
Salix purpurea
SapurV1A.0176s0470
I
0.937
LjSGA_061446.1
Lotus japonicus
LjSGA_061446.1
I
0.937
PRUPE_ppa017695mg
Prunus persica
PRUPE_ppa017695mg
I
0.937
Pm030597
Prunus mume
Pm030597
I
0.937
OPUNC08G19660
Oryza punctata
OPUNC08G19660
I
0.937
Lus10036812.g
Linum usitatissimum
Lus10036812.g
I
0.937
POPTR_0003s16780
Populus trichocarpa
POPTR_0003s16780
I
0.936
cassava17811.valid.m1
Manihot esculenta
cassava17811.valid.m1
I
0.934
POPTR_0001s13630
Populus trichocarpa
POPTR_0001s13630
I
0.933
Solyc05g015840.2
Solanum lycopersicum
Solyc05g015840.2
I
0.933
SapurV1A.1460s0110
Salix purpurea
SapurV1A.1460s0110
I
0.933
Cucsa.349620
Cucumis sativus
Cucsa.349620
I
0.933
PGSC0003DMG400021902
Solanum tuberosum
PGSC0003DMG400021902
I
0.933
Cla001541
Citrullus lanatus
Cla001541
I
0.933
Pavir.Fa00457
Panicum virgatum
Pavir.Fa00457
I
0.932
Pavir.Ba01534
Panicum virgatum
Pavir.Ba01534
N
0.931
Pavir.J30793
Panicum virgatum
Pavir.J30793
N
0.931
Ciclev10019546m.g
Citrus clementina
Ciclev10019546m.g
I
0.930
orange1.1g008680m.g
Citrus sinensis
orange1.1g008680m.g
I
0.930
MDP0000246046
Malus domestica
MDP0000246046
I
0.929
MDP0000171877
Malus domestica
MDP0000171877
I
0.929
GLYMA0005S50
Glycine max
GLYMA0005S50
I
0.928
Ca_19449
Cicer arietinum
Ca_19449
I
0.928
Pm016138
Prunus mume
Pm016138
I
0.928
GLYMA17G08840
Glycine max
GLYMA17G08840
I
0.928
Cucsa.198630
Cucumis sativus
Cucsa.198630
I
0.928
MTR_2g461920
Medicago truncatula
MTR_2g461920
I
0.928
MTR_4g109770
Medicago truncatula
MTR_4g109770
I
0.928
GLYMA04G32002
Glycine max
GLYMA04G32002
I
0.928
Pavir.Fb00717
Panicum virgatum
Pavir.Fb00717
N
0.927
Pavir.J28847
Panicum virgatum
Pavir.J28847
N
0.927
Si013747m.g
Setaria italica
Si013747m.g
N
0.927
MDP0000778465
Malus domestica
MDP0000778465
I
0.927
MDP0000146640
Malus domestica
MDP0000146640
I
0.927
30138.m003942
Ricinus communis
30138.m003942
I
0.926
PGSC0003DMG400024527
Solanum tuberosum
PGSC0003DMG400024527
I
0.925
Solyc03g114850.2
Solanum lycopersicum
Solyc03g114850.2
I
0.925
TCM_014330
Theobroma cacao
TCM_014330
I
0.925
POPTR_0010s16400
Populus trichocarpa
POPTR_0010s16400
I
0.924
SapurV1A.0072s0340
Salix purpurea
SapurV1A.0072s0340
I
0.924
Cucsa.113410
Cucumis sativus
Cucsa.113410
I
0.924
Lus10021141.g
Linum usitatissimum
Lus10021141.g
I
0.924
30174.m009082
Ricinus communis
30174.m009082
I
0.924
VIT_17s0000g05020
Vitis vinifera
VIT_17s0000g05020
I
0.924
cassava39122.m1
Manihot esculenta
cassava39122.m1
I
0.924
Cla019331
Citrullus lanatus
Cla019331
I
0.924
POPTR_0015s07140
Populus trichocarpa
POPTR_0015s07140
I
0.923
evm.TU.supercontig_2783.1
Carica papaya
evm.TU.supercontig_2783.1
I
0.923
Bra038324
Brassica rapa
Bra038324
I
0.923
Aquca_002_00889
Aquilegia coerulea
Aquca_002_00889
I
0.923
Aquca_040_00115
Aquilegia coerulea
Aquca_040_00115
N
0.923
Cla018827
Citrullus lanatus
Cla018827
I
0.923
PRUPE_ppa007202mg
Prunus persica
PRUPE_ppa007202mg
I
0.922
Bo6g108620
Brassica oleracea
Bo6g108620
N
0.922
Bra004363
Brassica rapa
Bra004363
N
0.922
Bo3g042890
Brassica oleracea
Bo3g042890
I
0.922
Bo2g062840
Brassica oleracea
Bo2g062840
I
0.921
LjT35D18.50.nc
Lotus japonicus
LjT35D18.50.nc
I
0.921
LPERR09G11920
Leersia perrieri
LPERR09G11920
I
0.921
VIT_01s0011g00130
Vitis vinifera
VIT_01s0011g00130
I
0.921
SPL18
Oryza sativa
OS09G0507100
I
0.920
OGLUM09G16320
Oryza glumaepatula
OGLUM09G16320
I
0.920
OBART09G15750
Oryza barthii
OBART09G15750
I
0.920
ONIVA09G16860
Oryza nivara
ONIVA09G16860
I
0.920
Lus10007984.g
Linum usitatissimum
Lus10007984.g
I
0.920
Gorai.001G057700
Gossypium raimondii
Gorai.001G057700
I
0.920
GLYMA02G13371
Glycine max
GLYMA02G13371
I
0.919
GLYMA01G08056
Glycine max
GLYMA01G08056
I
0.919
PRUPE_ppa023657mg
Prunus persica
PRUPE_ppa023657mg
I
0.919
cassava43385.valid.m1
Manihot esculenta
cassava43385.valid.m1
I
0.919
POPTR_0008s09750
Populus trichocarpa
POPTR_0008s09750
I
0.918
PK17790.1
Cannabis sativa
PK17790.1
I
0.917
cassava7440.valid.m1
Manihot esculenta
cassava7440.valid.m1
I
0.917
GRMZM2G098557
Zea mays
GRMZM2G098557
I
0.916
GRMZM2G169270
Zea mays
GRMZM2G169270
I
0.916
Sb07g027420
Sorghum bicolor
Sb07g027420
I
0.916
MDP0000142582
Malus domestica
MDP0000142582
N
0.915
Sb06g024630
Sorghum bicolor
Sb06g024630
I
0.915
AMTR_s00047p00197010
Amborella trichopoda
AMTR_s00047p00197010
I
0.912
Carubv10020369m.g
Capsella rubella
Carubv10020369m.g
I
0.912
Cagra.0537s0003
Capsella grandiflora
Cagra.0537s0003
I
0.912
Thhalv10018638m.g
Eutrema salsugineum
Thhalv10018638m.g
I
0.912
Solyc12g038520.1
Solanum lycopersicum
Solyc12g038520.1
I
0.911
PGSC0003DMG400023260
Solanum tuberosum
PGSC0003DMG400023260
I
0.911
Bra039656
Brassica rapa
Bra039656
I
0.908
30147.m014478
Ricinus communis
30147.m014478
I
0.908
Bo6g031220
Brassica oleracea
Bo6g031220
I
0.908
SELMODRAFT_28598
Selaginella moellendorffii
SELMODRAFT_28598
I
0.907
SELMODRAFT_28595
Selaginella moellendorffii
SELMODRAFT_28595
I
0.907
SapurV1A.0176s0510
Salix purpurea
SapurV1A.0176s0510
I
0.906
Traes_7DS_AB399594E
Triticum aestivum
Traes_7DS_AB399594E
I
0.905
MLOC_4792
Hordeum vulgare
MLOC_4792
I
0.905
F775_27970
Aegilops tauschii
F775_27970
I
0.905
BRADI3G40240
Brachypodium distachyon
BRADI3G40240
I
0.905
GLYMA07G19770
Glycine max
GLYMA07G19770
I
0.905
GLYMA20G00900
Glycine max
GLYMA20G00900
I
0.905
TRIUR3_31982
Triticum urartu
TRIUR3_31982
I
0.905
Traes_7AS_0F019FB93
Triticum aestivum
Traes_7AS_0F019FB93
I
0.905
POPTR_0008s09810
Populus trichocarpa
POPTR_0008s09810
I
0.904
GRMZM2G101511
Zea mays
GRMZM2G101511
N
0.904
Pavir.Fb01917
Panicum virgatum
Pavir.Fb01917
I
0.902
Si013151m.g
Setaria italica
Si013151m.g
I
0.902
AMTR_s00022p00106940
Amborella trichopoda
AMTR_s00022p00106940
I
0.902
PDK_20s1709081g002
Phoenix dactylifera
PDK_20s1709081g002
I
0.902
LPERR08G17180
Leersia perrieri
LPERR08G17180
I
0.902
MTR_1g035010
Medicago truncatula
MTR_1g035010
I
0.900
Lus10016275.g
Linum usitatissimum
Lus10016275.g
I
0.899
Sb07g026220
Sorghum bicolor
Sb07g026220
N
0.899
Lus10012020.g
Linum usitatissimum
Lus10012020.g
I
0.899
ORUFI08G24030
Oryza rufipogon
ORUFI08G24030
N
0.898
LjSGA_121222.1
Lotus japonicus
LjSGA_121222.1
I
0.897
gw1.313.30.1
Physcomitrella patens
gw1.313.30.1
I
0.895
MDP0000263766
Malus domestica
MDP0000263766
I
0.894
SPL15
Oryza indica
BGIOSGA028994
I
0.893
SapurV1A.0156s0200
Salix purpurea
SapurV1A.0156s0200
I
0.893
OPUNC08G18470
Oryza punctata
OPUNC08G18470
I
0.893
ORGLA08G0179900
Oryza glaberrima
ORGLA08G0179900
I
0.893
ORUFI08G22780
Oryza rufipogon
ORUFI08G22780
I
0.893
POPTR_0001s40870
Populus trichocarpa
POPTR_0001s40870
I
0.893
POPTR_0011s11770
Populus trichocarpa
POPTR_0011s11770
I
0.893
ONIVA08G22940
Oryza nivara
ONIVA08G22940
I
0.893
OMERI02G02300
Oryza meridionalis
OMERI02G02300
I
0.893
OBART08G20320
Oryza barthii
OBART08G20320
I
0.893
OGLUM08G21580
Oryza glumaepatula
OGLUM08G21580
I
0.893
OLONG_014873
Oryza longistaminata
OLONG_014873
I
0.893
GSMUA_Achr5G22250_001
Musa acuminata
GSMUA_Achr5G22250_001
I
0.893
SELMODRAFT_28635
Selaginella moellendorffii
SELMODRAFT_28635
N
0.892
SELMODRAFT_28634
Selaginella moellendorffii
SELMODRAFT_28634
N
0.892
GSMUA_Achr7G20620_001
Musa acuminata
GSMUA_Achr7G20620_001
I
0.891
mgf010913m
Mimulus guttatus
mgf010913m
I
0.891
mgf003797m
Mimulus guttatus
mgf003797m
I
0.891
MDP0000589558
Malus domestica
MDP0000589558
I
0.889
GSMUA_Achr2G03070_001
Musa acuminata
GSMUA_Achr2G03070_001
I
0.888
Cagra.0007s0069
Capsella grandiflora
Cagra.0007s0069
I
0.888
SapurV1A.1264s0060
Salix purpurea
SapurV1A.1264s0060
I
0.888
Carubv10014636m.g
Capsella rubella
Carubv10014636m.g
I
0.888
MDP0000176265
Malus domestica
MDP0000176265
I
0.887
AMTR_s00022p00198330
Amborella trichopoda
AMTR_s00022p00198330
I
0.887
Aquca_007_00971
Aquilegia coerulea
Aquca_007_00971
I
0.887
Ciclev10031270m.g
Citrus clementina
Ciclev10031270m.g
I
0.886
orange1.1g009653m.g
Citrus sinensis
orange1.1g009653m.g
I
0.886
gene22888-v1.0-hybrid
Fragaria vesca
gene22888-v1.0-hybrid
I
0.885