Pavir.Hb01173 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Hb01173 T323637_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.949 0.800
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb01173.1.p SBP 79 153

Links

Other SBP family TFs
Other Panicum virgatum TFs

264 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si026656m.g Setaria italica Si026656m.g I 0.984
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.979
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.973
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.973
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.971
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.970
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.968
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.968
SPL19 Oryza sativa OS11G0496600 I 0.968
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.967
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.967
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.966
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.966
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.966
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.966
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.966
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.966
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.966
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.965
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.964
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.964
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.964
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.962
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.961
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.961
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.961
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.961
PK19500.1 Cannabis sativa PK19500.1 I 0.959
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.959
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.959
OS01G0922600 Oryza sativa OS01G0922600 I 0.959
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.958
MDP0000193702 Malus domestica MDP0000193702 I 0.958
MDP0000119458 Malus domestica MDP0000119458 I 0.958
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.957
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.957
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.956
TCM_008671 Theobroma cacao TCM_008671 I 0.956
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.956
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.956
OBART01G42150 Oryza barthii OBART01G42150 I 0.955
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.954
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.953
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.953
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.953
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.953
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.953
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.953
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.952
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.952
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.952
29929.m004627 Ricinus communis 29929.m004627 I 0.952
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.952
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.952
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.952
SPL16 Oryza sativa OS08G0531600 I 0.952
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.952
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.952
TCM_014668 Theobroma cacao TCM_014668 I 0.951
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.951
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.951
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.951
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.950
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.950
Bo9g097630 Brassica oleracea Bo9g097630 I 0.950
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.950
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.950
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.950
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.950
Si001804m.g Setaria italica Si001804m.g I 0.949
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.949
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.949
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.949
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.949
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.949
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.949
SPL13A Arabidopsis thaliana AT5G50670 D 0.949
SPL13A Arabidopsis thaliana AT5G50570 I 0.949
Bo3g024180 Brassica oleracea Bo3g024180 I 0.949
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.949
Pm024528 Prunus mume Pm024528 I 0.949
Cla002666 Citrullus lanatus Cla002666 I 0.949
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.948
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.948
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.948
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.948
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.948
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.948
Ca_24733 Cicer arietinum Ca_24733 I 0.948
Cla004156 Citrullus lanatus Cla004156 I 0.947
Ca_05711 Cicer arietinum Ca_05711 I 0.947
PK02140.1 Cannabis sativa PK02140.1 I 0.947
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.947
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.947
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.947
Bra022766 Brassica rapa Bra022766 I 0.947
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.947
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.946
Pm025028 Prunus mume Pm025028 I 0.946
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.945
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.945
TCM_011483 Theobroma cacao TCM_011483 I 0.945
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.945
Ca_01426 Cicer arietinum Ca_01426 I 0.945
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.945
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.944
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.944
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.944
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.943
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.942
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.942
PK14243.1 Cannabis sativa PK14243.1 N 0.941
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.940
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.940
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.940
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.940
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.940
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.939
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.939
Cla019579 Citrullus lanatus Cla019579 I 0.939
SPL6 Arabidopsis thaliana AT1G69170 I 0.939
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.938
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.937
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.937
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.937
Pm030597 Prunus mume Pm030597 I 0.937
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.937
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.937
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.936
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.934
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.933
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.933
Cla001541 Citrullus lanatus Cla001541 I 0.933
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.933
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.933
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.933
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.932
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.931
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.931
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.930
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.930
MDP0000246046 Malus domestica MDP0000246046 I 0.929
MDP0000171877 Malus domestica MDP0000171877 I 0.929
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.928
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.928
Pm016138 Prunus mume Pm016138 I 0.928
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.928
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.928
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.928
Ca_19449 Cicer arietinum Ca_19449 I 0.928
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.928
MDP0000778465 Malus domestica MDP0000778465 I 0.927
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.927
MDP0000146640 Malus domestica MDP0000146640 I 0.927
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.927
Si013747m.g Setaria italica Si013747m.g N 0.927
30138.m003942 Ricinus communis 30138.m003942 I 0.926
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.925
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.925
TCM_014330 Theobroma cacao TCM_014330 I 0.925
30174.m009082 Ricinus communis 30174.m009082 I 0.924
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.924
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.924
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.924
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.924
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.924
Cla019331 Citrullus lanatus Cla019331 I 0.924
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.924
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.923
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.923
Bra038324 Brassica rapa Bra038324 I 0.923
Aquca_040_00115 Aquilegia coerulea Aquca_040_00115 N 0.923
Cla018827 Citrullus lanatus Cla018827 I 0.923
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.923
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.922
Bra004363 Brassica rapa Bra004363 N 0.922
Bo6g108620 Brassica oleracea Bo6g108620 N 0.922
Bo3g042890 Brassica oleracea Bo3g042890 I 0.922
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.921
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.921
Bo2g062840 Brassica oleracea Bo2g062840 I 0.921
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.921
SPL18 Oryza sativa OS09G0507100 I 0.920
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.920
OBART09G15750 Oryza barthii OBART09G15750 I 0.920
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.920
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.920
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.920
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.919
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.919
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.919
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.919
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.918
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.917
PK17790.1 Cannabis sativa PK17790.1 I 0.917
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.916
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.916
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.916
MDP0000142582 Malus domestica MDP0000142582 N 0.915
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.915
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.912
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.912
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.912
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.912
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.911
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.911
Bra039656 Brassica rapa Bra039656 I 0.908
30147.m014478 Ricinus communis 30147.m014478 I 0.908
Bo6g031220 Brassica oleracea Bo6g031220 I 0.908
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.907
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.907
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.906
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.905
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.905
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.905
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.905
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.905
F775_27970 Aegilops tauschii F775_27970 I 0.905
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.905
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.905
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.904
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.904
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.902
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.902
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.902
Si013151m.g Setaria italica Si013151m.g I 0.902
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.902
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.900
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.899
Sb07g026220 Sorghum bicolor Sb07g026220 N 0.899
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.899
ORUFI08G24030 Oryza rufipogon ORUFI08G24030 N 0.898
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.897
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.895
MDP0000263766 Malus domestica MDP0000263766 I 0.894
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.893
SPL15 Oryza indica BGIOSGA028994 I 0.893
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.893
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.893
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.893
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.893
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.893
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.893
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.893
OBART08G20320 Oryza barthii OBART08G20320 I 0.893
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.893
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.893
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.893
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.892
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.892
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.891
mgf010913m Mimulus guttatus mgf010913m I 0.891
mgf003797m Mimulus guttatus mgf003797m I 0.891
MDP0000589558 Malus domestica MDP0000589558 I 0.889
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.888
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.888
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.888
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.888
MDP0000176265 Malus domestica MDP0000176265 I 0.887
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.887
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.887
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.886
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.886
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.885