Lus10036812.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10036812.g T323545_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.931 0.693
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.888 0.653
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.888 0.653
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.888 0.653
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10036812 SBP 134 208

Links

Other SBP family TFs
Other Linum usitatissimum TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.984
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.980
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.976
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.976
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.976
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.976
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.976
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.976
Ca_19449 Cicer arietinum Ca_19449 I 0.976
30174.m009082 Ricinus communis 30174.m009082 I 0.976
MDP0000778465 Malus domestica MDP0000778465 I 0.976
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.976
MDP0000146640 Malus domestica MDP0000146640 I 0.976
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.976
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.976
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.976
Cla019331 Citrullus lanatus Cla019331 I 0.976
TCM_014330 Theobroma cacao TCM_014330 I 0.976
30138.m003942 Ricinus communis 30138.m003942 I 0.975
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.974
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.974
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.974
Cla018827 Citrullus lanatus Cla018827 I 0.974
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.974
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.973
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.973
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.973
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.973
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.973
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.973
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.972
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.972
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.972
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.969
MDP0000193702 Malus domestica MDP0000193702 I 0.968
PK17790.1 Cannabis sativa PK17790.1 I 0.968
MDP0000119458 Malus domestica MDP0000119458 I 0.968
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.967
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.964
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.964
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.964
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.964
MDP0000589558 Malus domestica MDP0000589558 I 0.964
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.962
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.962
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.961
Pm025028 Prunus mume Pm025028 I 0.961
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.961
TCM_011483 Theobroma cacao TCM_011483 I 0.959
Bo3g042890 Brassica oleracea Bo3g042890 I 0.958
Ca_24655 Cicer arietinum Ca_24655 I 0.958
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.957
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.956
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.956
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.956
SPL6 Arabidopsis thaliana AT1G69170 I 0.955
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.954
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.954
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.954
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.953
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.953
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.953
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.953
Pm030597 Prunus mume Pm030597 I 0.953
SPL19 Oryza sativa OS11G0496600 I 0.953
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.953
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.952
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.952
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.951
MDP0000171877 Malus domestica MDP0000171877 I 0.951
MDP0000246046 Malus domestica MDP0000246046 I 0.951
Cla001541 Citrullus lanatus Cla001541 I 0.950
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.950
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.946
Si001804m.g Setaria italica Si001804m.g I 0.946
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.946
MDP0000142582 Malus domestica MDP0000142582 N 0.945
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.943
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.943
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.942
Bra038324 Brassica rapa Bra038324 I 0.942
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.942
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.942
PK03565.1 Cannabis sativa PK03565.1 I 0.942
Bo2g062840 Brassica oleracea Bo2g062840 I 0.940
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.939
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.939
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.939
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.937
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.937
Si026656m.g Setaria italica Si026656m.g I 0.937
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.937
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.937
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.936
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.936
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.936
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.936
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.935
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.935
TCM_008671 Theobroma cacao TCM_008671 I 0.935
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.935
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.933
Bo9g097630 Brassica oleracea Bo9g097630 I 0.933
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.933
OB04G27960 Oryza brachyantha OB04G27960 I 0.932
GLYMA06G22545 Glycine max GLYMA06G22545 N 0.932
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.931
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.931
SPL13A Arabidopsis thaliana AT5G50570 I 0.931
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.931
OBART04G20940 Oryza barthii OBART04G20940 I 0.931
Bo3g024180 Brassica oleracea Bo3g024180 I 0.931
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.931
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.931
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.931
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.931
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.931
SPL13A Arabidopsis thaliana AT5G50670 D 0.931
SPL7 Oryza sativa OS04G0551500 I 0.931
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.931
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.931
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.929
Bra022766 Brassica rapa Bra022766 I 0.929
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.929
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.929
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.928
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.928
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.928
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.927
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.925
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.924
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.924
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.924
TCM_014668 Theobroma cacao TCM_014668 I 0.924
Cla021411 Citrullus lanatus Cla021411 I 0.923
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.922
Pm024528 Prunus mume Pm024528 I 0.921
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.921
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.921
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.921
Cla002666 Citrullus lanatus Cla002666 I 0.921
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.921
PK02140.1 Cannabis sativa PK02140.1 I 0.919
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.919
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.919
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.918
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.918
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.917
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.916
PK19500.1 Cannabis sativa PK19500.1 I 0.915
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.915
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.915
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.915
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.914
Ca_01426 Cicer arietinum Ca_01426 I 0.914
Bra004363 Brassica rapa Bra004363 N 0.914
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.914
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.914
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.914
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.913
Bo6g108620 Brassica oleracea Bo6g108620 N 0.913
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.913
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.913
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.912
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.912
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.912
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.912
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.912
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.912
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.912
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.912
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.912
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.911
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.911
Ca_05711 Cicer arietinum Ca_05711 I 0.911
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.911
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.910
Pm010075 Prunus mume Pm010075 I 0.910
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.910
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.909
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.909
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.909
29929.m004627 Ricinus communis 29929.m004627 I 0.909
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.908
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.908
Bra039656 Brassica rapa Bra039656 I 0.907
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.907
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.907
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.907
Si013747m.g Setaria italica Si013747m.g N 0.907
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.907
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.907
Bo6g031220 Brassica oleracea Bo6g031220 I 0.907
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.907
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.905
F775_27970 Aegilops tauschii F775_27970 I 0.904
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.904
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.904
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.904
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.904
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.904
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.904
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.903
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.901
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.901
OS01G0922600 Oryza sativa OS01G0922600 I 0.901
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.901
Cla019579 Citrullus lanatus Cla019579 I 0.901
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.901
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.901
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.901
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.900
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.897
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.897
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.897
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.896
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.896
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.896
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.896
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.896
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.896
Ca_24733 Cicer arietinum Ca_24733 I 0.894
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.894
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.894
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.894
Pm016138 Prunus mume Pm016138 I 0.894
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.894
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.894
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.892
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.892
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.892
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.892
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.892
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.892
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.892
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.892
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.892
SPL15 Oryza indica BGIOSGA028994 I 0.892
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.892
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.892
OBART08G20320 Oryza barthii OBART08G20320 I 0.892
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.891
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.891
Si010262m.g Setaria italica Si010262m.g I 0.891
TCM_005620 Theobroma cacao TCM_005620 I 0.891
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.891
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.891
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.891
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.891
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.890
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.890
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.890
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.890
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.890
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.889
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.889
SPL5 Arabidopsis thaliana AT3G15270 D 0.888
Si032170m.g Setaria italica Si032170m.g I 0.888
30174.m008805 Ricinus communis 30174.m008805 I 0.887
Ca_10879 Cicer arietinum Ca_10879 I 0.887
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.887
OBART01G42150 Oryza barthii OBART01G42150 I 0.887
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.887
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.887
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.887
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.886
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.886
F775_02791 Aegilops tauschii F775_02791 I 0.886
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.886
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.886
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.886
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.886
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.886
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.886
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.886
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.886