MTR_2g078770 (Medicago truncatula)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MTR_2g078770 T322733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.931 0.747
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.929 0.733
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.928 0.773
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.921 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.921 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.921 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.919 0.693
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.916 0.747
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.914 0.747
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.914 0.747
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.914 0.747
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.911 0.693
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.903 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.901 0.733
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.897 0.733
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.897 0.733
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.897 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH38697 SBP 58 132

Links

Other SBP family TFs
Other Medicago truncatula TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_22526 Cicer arietinum Ca_22526 I 0.973
GLYMA12G35460 Glycine max GLYMA12G35460 I 0.963
GLYMA13G35000 Glycine max GLYMA13G35000 I 0.963
28211.m000132 Ricinus communis 28211.m000132 I 0.957
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.955
TCM_031595 Theobroma cacao TCM_031595 I 0.953
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.953
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.953
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.952
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.952
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.952
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.951
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.948
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.947
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.943
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.938
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.938
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.936
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.936
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.936
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.934
Bo5g127310 Brassica oleracea Bo5g127310 I 0.932
Bra027265 Brassica rapa Bra027265 I 0.932
Bra038101 Brassica rapa Bra038101 I 0.932
SPL4 Arabidopsis thaliana AT1G53160 D 0.931
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.931
SPL12 Arabidopsis thaliana AT3G60030 D 0.929
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.929
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.928
PK22320.1 Cannabis sativa PK22320.1 D 0.928
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.928
MDP0000156994 Malus domestica MDP0000156994 I 0.927
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.927
MDP0000861601 Malus domestica MDP0000861601 I 0.927
Ca_18591 Cicer arietinum Ca_18591 I 0.926
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.926
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.926
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.926
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.926
Bo2g091010 Brassica oleracea Bo2g091010 I 0.925
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.925
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.925
Bra015732 Brassica rapa Bra015732 I 0.924
Bo6g120690 Brassica oleracea Bo6g120690 I 0.924
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.924
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.924
Ca_16243 Cicer arietinum Ca_16243 I 0.924
Bra025863 Brassica rapa Bra025863 I 0.923
MDP0000158607 Malus domestica MDP0000158607 I 0.922
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.922
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.921
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.921
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.921
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I 0.921
SPL14 Arabidopsis thaliana AT1G20980 D 0.921
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I 0.921
Si034095m.g Setaria italica Si034095m.g I 0.921
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.921
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.921
TCM_034803 Theobroma cacao TCM_034803 I 0.921
Ca_01036 Cicer arietinum Ca_01036 I 0.921
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I 0.921
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I 0.921
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.921
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.921
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.921
Bo6g029290 Brassica oleracea Bo6g029290 I 0.921
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.921
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.920
Bo5g030930 Brassica oleracea Bo5g030930 I 0.920
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.920
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D 0.919
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.918
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.918
TCM_004922 Theobroma cacao TCM_004922 I 0.917
Pm011381 Prunus mume Pm011381 I 0.916
30076.m004574 Ricinus communis 30076.m004574 I 0.916
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.916
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.916
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.916
Ca_03548 Cicer arietinum Ca_03548 I 0.916
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.916
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.916
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.916
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.916
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.916
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.916
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.916
PK06791.1 Cannabis sativa PK06791.1 D 0.916
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.915
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.915
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.914
SPL5 Arabidopsis thaliana AT3G15270 D 0.914
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.914
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.914
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.914
Cla002263 Citrullus lanatus Cla002263 I 0.913
mgf009459m Mimulus guttatus mgf009459m I 0.912
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.911
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.911
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.911
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.911
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.911
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.911
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.911
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.911
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.911
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.911
F775_27970 Aegilops tauschii F775_27970 I 0.911
MDP0000919693 Malus domestica MDP0000919693 I 0.911
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.910
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.910
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.910
F775_31139 Aegilops tauschii F775_31139 I 0.910
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.910
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.910
OB03G47050 Oryza brachyantha OB03G47050 I 0.910
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.910
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.910
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.910
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.910
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.910
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.910
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.910
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.910
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.910
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.910
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.910
SPL6 Oryza sativa OS03G0833300 I 0.910
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.910
OBART03G39900 Oryza barthii OBART03G39900 I 0.910
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.910
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.910
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.910
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.909
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.909
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.909
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.909
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.909
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.909
mgf025134m Mimulus guttatus mgf025134m I 0.909
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.909
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.908
OB04G27960 Oryza brachyantha OB04G27960 I 0.908
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.908
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.907
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.907
OBART04G20940 Oryza barthii OBART04G20940 I 0.907
SPL7 Oryza sativa OS04G0551500 I 0.907
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.907
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.907
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.907
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.907
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.907
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.907
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.907
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.907
Bra039656 Brassica rapa Bra039656 I 0.906
Cla017596 Citrullus lanatus Cla017596 I 0.906
MDP0000149339 Malus domestica MDP0000149339 I 0.906
Bo6g031220 Brassica oleracea Bo6g031220 I 0.906
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.906
29889.m003388 Ricinus communis 29889.m003388 I 0.905
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.905
OB08G27190 Oryza brachyantha OB08G27190 I 0.905
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.905
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.904
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.904
Bo4g005730 Brassica oleracea Bo4g005730 I 0.904
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.904
Bra041037 Brassica rapa Bra041037 I 0.904
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.904
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.903
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.903
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.903
Pm022881 Prunus mume Pm022881 I 0.903
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D 0.903
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.902
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.902
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.902
MDP0000180408 Malus domestica MDP0000180408 I 0.902
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.902
TCM_021482 Theobroma cacao TCM_021482 I 0.902
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.902
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.902
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.902
AMTR_s00062p00211520 Amborella trichopoda AMTR_s00062p00211520 I 0.902
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.902
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.901
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.901
Cla023735 Citrullus lanatus Cla023735 I 0.901
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.901
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.901
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.901
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.901
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.901
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.900
MDP0000919694 Malus domestica MDP0000919694 I 0.900
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.900
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.900
OBART08G20320 Oryza barthii OBART08G20320 I 0.900
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.900
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.900
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.900
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.900
SPL15 Oryza indica BGIOSGA028994 I 0.900
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.900
Gorai.002G068300 Gossypium raimondii Gorai.002G068300 I 0.900
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.899
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.899
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.898
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.897
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.897
SPL1 Arabidopsis thaliana AT2G47070 D 0.897
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.897
29983.m003158 Ricinus communis 29983.m003158 I 0.896
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.896
Si032170m.g Setaria italica Si032170m.g I 0.896
GRMZM2G138421 Zea mays GRMZM2G138421 I 0.896
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.896
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.896
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.893
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.893
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.893
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.892
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.892
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.892
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.892
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.891
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.891
mgf002455m Mimulus guttatus mgf002455m I 0.891
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.890
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.889
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.888
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.888
TCM_029832 Theobroma cacao TCM_029832 I 0.888
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.887
Bo4g042390 Brassica oleracea Bo4g042390 I 0.887
Bra005470 Brassica rapa Bra005470 I 0.887
MDP0000180409 Malus domestica MDP0000180409 I 0.887
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.886
mgf000195m Mimulus guttatus mgf000195m I 0.886
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.886