PGSC0003DMG401029709 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG401029709 T322940_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.918 0.773
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.918 0.773
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.918 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400076398 SBP 52 92
PGSC0003DMT400076399 SBP 52 126
PGSC0003DMT400076400 SBP 52 98

Links

Other SBP family TFs
Other Solanum tuberosum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL3 Arabidopsis thaliana AT2G33810 D 0.918
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.889
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.889
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.914
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.889
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.888
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.906
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.922
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.887
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.921
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.921
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.905
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.890
mgf017351m Mimulus guttatus mgf017351m I 0.914
mgf016414m Mimulus guttatus mgf016414m I 0.923
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.924
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.897
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.887
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.913
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.913
PK26639.1 Cannabis sativa PK26639.1 I 0.912
PK25661.1 Cannabis sativa PK25661.1 I 0.887
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.919
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.902
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.933
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.903
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.923
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.887
MDP0000861601 Malus domestica MDP0000861601 I 0.938
MDP0000158607 Malus domestica MDP0000158607 I 0.917
MDP0000156994 Malus domestica MDP0000156994 I 0.938
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.887
mgf001295m Mimulus guttatus mgf001295m I 0.925
mgf001202m Mimulus guttatus mgf001202m I 0.893
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.899
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.940
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.914
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.914
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.932
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.922
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.914
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.913
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.920
Bra022954 Brassica rapa Bra022954 I 0.888
Bra021880 Brassica rapa Bra021880 I 0.897
Bra005470 Brassica rapa Bra005470 I 0.925
Bo4g042390 Brassica oleracea Bo4g042390 I 0.925
Bo3g027460 Brassica oleracea Bo3g027460 I 0.918
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.902
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.943
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.917
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.919
30170.m014245 Ricinus communis 30170.m014245 I 0.887
29983.m003158 Ricinus communis 29983.m003158 I 0.907
Pm011381 Prunus mume Pm011381 I 0.917
Cla023735 Citrullus lanatus Cla023735 I 0.913
Cla009788 Citrullus lanatus Cla009788 I 0.914
Cla002263 Citrullus lanatus Cla002263 I 0.894
Ca_16243 Cicer arietinum Ca_16243 I 0.914
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.887
TCM_029832 Theobroma cacao TCM_029832 I 0.929
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.950
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.895
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.943
Si032170m.g Setaria italica Si032170m.g I 0.887
Pavir.Ba01146 Panicum virgatum Pavir.Ba01146 N 0.931
Pavir.Bb02759 Panicum virgatum Pavir.Bb02759 N 0.925