Cagra.8874s0008 (Capsella grandiflora)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cagra.8874s0008 T323409_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.983 0.933
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.983 0.933
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.977 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.8874s0008.1.p SBP 176 250
Cagra.8874s0008.2.p SBP 176 250
Cagra.8874s0008.3.p SBP 139 213
Cagra.8874s0008.4.p SBP 139 213

Links

Other SBP family TFs
Other Capsella grandiflora TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.987
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.981
SPL11 Arabidopsis thaliana AT1G27360 D 0.983
SPL10 Arabidopsis thaliana AT1G27370 D 0.977
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.990
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.991
Bo5g051970 Brassica oleracea Bo5g051970 I 0.980
Bo5g051980 Brassica oleracea Bo5g051980 I 0.983
Bo3g141480 Brassica oleracea Bo3g141480 I 0.964
Bo7g049950 Brassica oleracea Bo7g049950 I 0.981
Bo7g049940 Brassica oleracea Bo7g049940 I 0.983
Bra032823 Brassica rapa Bra032823 I 0.981
Bra032822 Brassica rapa Bra032822 I 0.945
Bra010949 Brassica rapa Bra010949 I 0.981
Bra030041 Brassica rapa Bra030041 I 0.984
Bra030040 Brassica rapa Bra030040 I 0.984
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.988
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.991
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.988
Ca_08506 Cicer arietinum Ca_08506 I 0.934
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.929
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.987
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.981
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.930
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.918
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.890
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.890
29929.m004641 Ricinus communis 29929.m004641 I 0.895
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.890
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.890
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.891
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.895