SPL11 (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT1G27360 T322388_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
(Direct) (Direct)
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.967 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02471_2.00 SBP 52 126

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G27360.1 SBP 175 249
AT1G27360.2 SBP 175 249
AT1G27360.3 SBP 175 249
AT1G27360.4 SBP 175 249

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.987
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.987
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.983
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.983
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.983
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.982
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.982
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.981
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.981
Bo7g049950 Brassica oleracea Bo7g049950 I 0.977
Bra030040 Brassica rapa Bra030040 I 0.974
Bra030041 Brassica rapa Bra030041 I 0.974
Bo7g049940 Brassica oleracea Bo7g049940 I 0.974
Bo5g051980 Brassica oleracea Bo5g051980 I 0.973
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.971
Bra010949 Brassica rapa Bra010949 I 0.970
Bra032823 Brassica rapa Bra032823 I 0.970
Bo5g051970 Brassica oleracea Bo5g051970 I 0.969
SPL10 Arabidopsis thaliana AT1G27370 D 0.967
Bo3g141480 Brassica oleracea Bo3g141480 I 0.945
Ca_08506 Cicer arietinum Ca_08506 I 0.913
Bra032822 Brassica rapa Bra032822 I 0.906
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.898
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.896