Bra030040 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra030040 T322474_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.980 0.947
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.974 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.974 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030040.1-P SBP 172 246

Links

Other SBP family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g051980 Brassica oleracea Bo5g051980 I 0.991
Bra010949 Brassica rapa Bra010949 I 0.990
Bo7g049950 Brassica oleracea Bo7g049950 I 0.990
Bra030041 Brassica rapa Bra030041 I 0.986
Bo7g049940 Brassica oleracea Bo7g049940 I 0.985
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.984
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.984
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.984
Bra032823 Brassica rapa Bra032823 I 0.984
Bo5g051970 Brassica oleracea Bo5g051970 I 0.983
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.982
Bo3g141480 Brassica oleracea Bo3g141480 I 0.981
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.980
SPL10 Arabidopsis thaliana AT1G27370 D 0.980
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.980
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.979
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.979
SPL11 Arabidopsis thaliana AT1G27360 D 0.974
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.971
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.971
Bra032822 Brassica rapa Bra032822 I 0.947
Ca_08506 Cicer arietinum Ca_08506 I 0.940
29929.m004641 Ricinus communis 29929.m004641 I 0.939
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.935
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.934
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.930
mgf019346m Mimulus guttatus mgf019346m I 0.925
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.903
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.898
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.898
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.898
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.898
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.893
PK16953.1 Cannabis sativa PK16953.1 N 0.890
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.888
Bo9g058970 Brassica oleracea Bo9g058970 N 0.888
SPL2 Arabidopsis thaliana AT5G43270 N 0.888
Bra027478 Brassica rapa Bra027478 N 0.888
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.888
Bra033671 Brassica rapa Bra033671 N 0.888
Pm007020 Prunus mume Pm007020 N 0.886
MDP0000155354 Malus domestica MDP0000155354 N 0.886