CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10011356.g
(
Linum usitatissimum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Lus10011356.g
T323531_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.928
0.853
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10011356
SBP
136
210
CQVEGCNLDLSGAKDYHRKHRVCEGHSKCPKVVVAGLERRFCQQCSRFHSLFEFDEKKRSCRKRLSDHNARRRKP
Links
Other
SBP
family TFs
Other
Linum usitatissimum
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf010397m
Mimulus guttatus
mgf010397m
N
0.981
Lus10006411.g
Linum usitatissimum
Lus10006411.g
I
0.980
Eucgr.B03500
Eucalyptus grandis
Eucgr.B03500
I
0.980
VIT_01s0010g03710
Vitis vinifera
VIT_01s0010g03710
I
0.970
29929.m004641
Ricinus communis
29929.m004641
I
0.970
SapurV1A.0056s0240
Salix purpurea
SapurV1A.0056s0240
I
0.968
SapurV1A.1271s0060
Salix purpurea
SapurV1A.1271s0060
I
0.968
POPTR_0001s13890
Populus trichocarpa
POPTR_0001s13890
I
0.968
POPTR_0003s17120
Populus trichocarpa
POPTR_0003s17120
I
0.968
evm.TU.supercontig_43.66
Carica papaya
evm.TU.supercontig_43.66
I
0.966
BRADI3G05510
Brachypodium distachyon
BRADI3G05510
I
0.965
Aquca_018_00218
Aquilegia coerulea
Aquca_018_00218
I
0.960
mgf019346m
Mimulus guttatus
mgf019346m
I
0.959
PGSC0003DMG400026736
Solanum tuberosum
PGSC0003DMG400026736
I
0.956
Pavir.Ab00499
Panicum virgatum
Pavir.Ab00499
N
0.953
Pavir.J20730
Panicum virgatum
Pavir.J20730
N
0.953
Si017749m.g
Setaria italica
Si017749m.g
N
0.951
cassava6540.valid.m1
Manihot esculenta
cassava6540.valid.m1
N
0.948
PK16953.1
Cannabis sativa
PK16953.1
N
0.944
TCM_008772
Theobroma cacao
TCM_008772
N
0.944
Bra033671
Brassica rapa
Bra033671
N
0.943
Bra027478
Brassica rapa
Bra027478
N
0.943
SPL2
Arabidopsis lyrata
scaffold_800740.1
N
0.943
Bo9g058970
Brassica oleracea
Bo9g058970
N
0.943
Thhalv10003215m.g
Eutrema salsugineum
Thhalv10003215m.g
N
0.943
SPL2
Arabidopsis thaliana
AT5G43270
N
0.943
MDP0000155354
Malus domestica
MDP0000155354
N
0.942
Pm007020
Prunus mume
Pm007020
N
0.942
Cagra.8694s0002
Capsella grandiflora
Cagra.8694s0002
N
0.941
Bo7g065290
Brassica oleracea
Bo7g065290
N
0.941
Carubv10026434m.g
Capsella rubella
Carubv10026434m.g
N
0.941
LjSGA_032871.1
Lotus japonicus
LjSGA_032871.1
N
0.941
PRUPE_ppa005013mg
Prunus persica
PRUPE_ppa005013mg
N
0.939
GSMUA_Achr4G12470_001
Musa acuminata
GSMUA_Achr4G12470_001
I
0.937
cassava12059.valid.m1
Manihot esculenta
cassava12059.valid.m1
N
0.937
orange1.1g011640m.g
Citrus sinensis
orange1.1g011640m.g
N
0.936
Ciclev10031391m.g
Citrus clementina
Ciclev10031391m.g
N
0.936
Gorai.002G182700
Gossypium raimondii
Gorai.002G182700
N
0.934
GSMUA_Achr9G23140_001
Musa acuminata
GSMUA_Achr9G23140_001
I
0.934
Bo5g051980
Brassica oleracea
Bo5g051980
I
0.933
Bra030040
Brassica rapa
Bra030040
I
0.930
Bra030041
Brassica rapa
Bra030041
I
0.930
SPL10
Arabidopsis thaliana
AT1G27370
D
0.928
Bostr.3148s0148
Boechera stricta
Bostr.3148s0148
N
0.928
Bo7g049940
Brassica oleracea
Bo7g049940
I
0.928
Bostr.15697s0063
Boechera stricta
Bostr.15697s0063
I
0.926
SPL10
Arabidopsis lyrata
fgenesh2_kg.1__2893__AT1G27370.2
I
0.926
Thhalv10007832m.g
Eutrema salsugineum
Thhalv10007832m.g
I
0.926
Ca_11356
Cicer arietinum
Ca_11356
I
0.924
Bo7g049950
Brassica oleracea
Bo7g049950
I
0.924
Bra032823
Brassica rapa
Bra032823
I
0.920
Bra010949
Brassica rapa
Bra010949
I
0.919
Cagra.8874s0008
Capsella grandiflora
Cagra.8874s0008
I
0.918
Bostr.15697s0062
Boechera stricta
Bostr.15697s0062
I
0.918
Carubv10009364m.g
Capsella rubella
Carubv10009364m.g
I
0.918
GSMUA_Achr3G05360_001
Musa acuminata
GSMUA_Achr3G05360_001
N
0.916
GSMUA_Achr10G02970_001
Musa acuminata
GSMUA_Achr10G02970_001
N
0.916
Bo5g051970
Brassica oleracea
Bo5g051970
I
0.916
GSMUA_Achr9G14160_001
Musa acuminata
GSMUA_Achr9G14160_001
N
0.915
GLYMA11G36980
Glycine max
GLYMA11G36980
N
0.913
GSMUA_Achr5G22630_001
Musa acuminata
GSMUA_Achr5G22630_001
N
0.912
MTR_3g085180
Medicago truncatula
MTR_3g085180
N
0.912
GRMZM2G163813
Zea mays
GRMZM2G163813
N
0.910
Solyc04g045560.2
Solanum lycopersicum
Solyc04g045560.2
N
0.909
GRMZM2G126827
Zea mays
GRMZM2G126827
N
0.909
GRMZM2G156621
Zea mays
GRMZM2G156621
N
0.909
GSMUA_Achr8G23820_001
Musa acuminata
GSMUA_Achr8G23820_001
N
0.909
Sb04g004940
Sorghum bicolor
Sb04g004940
N
0.909
LjSGA_017270.1
Lotus japonicus
LjSGA_017270.1
N
0.908
Ca_08506
Cicer arietinum
Ca_08506
I
0.906
PGSC0003DMG400034310
Solanum tuberosum
PGSC0003DMG400034310
N
0.904
MLOC_62426
Hordeum vulgare
MLOC_62426
N
0.904
Traes_6AS_32A35158A
Triticum aestivum
Traes_6AS_32A35158A
N
0.901
Traes_6DS_C4D93239C
Triticum aestivum
Traes_6DS_C4D93239C
N
0.901
GLYMA18G00903
Glycine max
GLYMA18G00903
N
0.897
MDP0000249364
Malus domestica
MDP0000249364
N
0.897
OB02G12930
Oryza brachyantha
OB02G12930
N
0.896
Cagra.8874s0007
Capsella grandiflora
Cagra.8874s0007
I
0.895
Carubv10009367m.g
Capsella rubella
Carubv10009367m.g
I
0.895
ORGLA02G0051400
Oryza glaberrima
ORGLA02G0051400
N
0.891
BGIOSGA007643
Oryza indica
BGIOSGA007643
N
0.891
GSMUA_Achr5G21990_001
Musa acuminata
GSMUA_Achr5G21990_001
N
0.891
LPERR02G04880
Leersia perrieri
LPERR02G04880
N
0.891
SPL4
Oryza sativa
OS02G0174100
N
0.891
ORUFI02G05750
Oryza rufipogon
ORUFI02G05750
N
0.891
OMERI02G06420
Oryza meridionalis
OMERI02G06420
N
0.891
OPUNC02G04800
Oryza punctata
OPUNC02G04800
N
0.891
OGLUM02G05530
Oryza glumaepatula
OGLUM02G05530
N
0.891
GSMUA_Achr4G05720_001
Musa acuminata
GSMUA_Achr4G05720_001
N
0.890
GRMZM2G065451
Zea mays
GRMZM2G065451
N
0.889
GRMZM2G097275
Zea mays
GRMZM2G097275
N
0.889
LPERR06G22200
Leersia perrieri
LPERR06G22200
N
0.887
GSMUA_Achr6G36010_001
Musa acuminata
GSMUA_Achr6G36010_001
N
0.887