Carubv10009367m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10009367m.g T323413_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.987 0.947
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.987 0.947
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.970 0.920
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009367m SBP 176 250
Carubv10009368m SBP 176 250

Links

Other SBP family TFs
Other Capsella rubella TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL11 Arabidopsis thaliana AT1G27360 D 0.987
SPL10 Arabidopsis thaliana AT1G27370 D 0.970
Bo3g141480 Brassica oleracea Bo3g141480 I 0.954
Bo5g051970 Brassica oleracea Bo5g051970 I 0.974
Bo5g051980 Brassica oleracea Bo5g051980 I 0.978
Bo7g049940 Brassica oleracea Bo7g049940 I 0.978
Bo7g049950 Brassica oleracea Bo7g049950 I 0.975
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.988
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.986
Bra010949 Brassica rapa Bra010949 I 0.975
Bra030040 Brassica rapa Bra030040 I 0.979
Bra030041 Brassica rapa Bra030041 I 0.979
Bra032822 Brassica rapa Bra032822 I 0.929
Bra032823 Brassica rapa Bra032823 I 0.975
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.991
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.988
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.988
Ca_08506 Cicer arietinum Ca_08506 I 0.915
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.908
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.983
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.910
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.895
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.975
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.983
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.976