Thhalv10007832m.g (Eutrema salsugineum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Thhalv10007832m.g T323683_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.982 0.933
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.982 0.933
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.981 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007828m SBP 175 249
Thhalv10007832m SBP 175 249

Links

Other SBP family TFs
Other Eutrema salsugineum TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29736.m002027 Ricinus communis 29736.m002027 N 0.000
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N 0.000
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N 0.000
WHY1 Arabidopsis thaliana AT1G14410 N 0.000
WHY3 Arabidopsis thaliana AT2G02740 N 0.000
BGIOSGA022297 Oryza indica BGIOSGA022297 N 0.000
Bo7g080560 Brassica oleracea Bo7g080560 N 0.000
Bo8g066030 Brassica oleracea Bo8g066030 N 0.000
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N 0.000
Bra016702 Brassica rapa Bra016702 N 0.000
Bra024809 Brassica rapa Bra024809 N 0.000
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N 0.000
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N 0.000
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N 0.000
Carubv10010024m.g Capsella rubella Carubv10010024m.g N 0.000
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 0.000
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.000
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.000
Cla022217 Citrullus lanatus Cla022217 N 0.000
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.000
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.000
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N 0.000
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.000
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.000
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.000
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.000
GRMZM2G155662 Zea mays GRMZM2G155662 N 0.000
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.000
MDP0000268451 Malus domestica MDP0000268451 N 0.000
mgf002465m Mimulus guttatus mgf002465m N 0.000
MLOC_11586 Hordeum vulgare MLOC_11586 N 0.000
OBART06G03050 Oryza barthii OBART06G03050 N 0.000
OMERI06G03280 Oryza meridionalis OMERI06G03280 N 0.000
OMERI07G11550 Oryza meridionalis OMERI07G11550 N 0.000
ONIVA06G03980 Oryza nivara ONIVA06G03980 N 0.000
OPUNC06G02750 Oryza punctata OPUNC06G02750 N 0.000
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.000
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N 0.000
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N 0.000
OS06G0145800 Oryza sativa OS06G0145800 N 0.000
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N 0.000
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N 0.000
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N 0.000
PK22670.1 Cannabis sativa PK22670.1 N 0.000
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.000
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.000
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N 0.000
Sb10g003170 Sorghum bicolor Sb10g003170 N 0.000
Si006951m.g Setaria italica Si006951m.g N 0.000
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.000
TCM_011795 Theobroma cacao TCM_011795 N 0.000
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.000
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N 0.000
Traes_7DS_B1FD1C84F Triticum aestivum Traes_7DS_B1FD1C84F N 0.000
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.000