Thhalv10007882m.g (Eutrema salsugineum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Thhalv10007882m.g T323684_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.971 0.947
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.971 0.947
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.960 0.947
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007882m SBP 176 250
Thhalv10007887m SBP 176 250

Links

Other SBP family TFs
Other Eutrema salsugineum TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo3g141480 Brassica oleracea Bo3g141480 I 0.975
Bo5g051970 Brassica oleracea Bo5g051970 I 0.965
Bo5g051980 Brassica oleracea Bo5g051980 I 0.970
Bo7g049940 Brassica oleracea Bo7g049940 I 0.970
Bo7g049950 Brassica oleracea Bo7g049950 I 0.966
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.981
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.979
Bra010949 Brassica rapa Bra010949 I 0.966
Bra030040 Brassica rapa Bra030040 I 0.971
Bra030041 Brassica rapa Bra030041 I 0.971
Bra032822 Brassica rapa Bra032822 I 0.895
Bra032823 Brassica rapa Bra032823 I 0.967
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.976
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.981
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.981
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.976
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.889
Ca_08506 Cicer arietinum Ca_08506 I 0.951
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.919
SPL10 Arabidopsis thaliana AT1G27370 D 0.960
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.977
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.967
SPL11 Arabidopsis thaliana AT1G27360 D 0.971
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.977