SIG4 (Arabidopsis lyrata)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 scaffold_601382.1 T323977_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_601382.1 Sigma 70 44 107

Links

Other Sigma 70 family TFs
Other Arabidopsis lyrata TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGD Arabidopsis thaliana AT5G13730 N 0.875
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.875
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.875
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.875
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.797
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.775
Bo2g011520 Brassica oleracea Bo2g011520 N 0.775
Bo9g166510 Brassica oleracea Bo9g166510 N 0.775
Bra008807 Brassica rapa Bra008807 N 0.775
Bra023430 Brassica rapa Bra023430 N 0.775
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.750
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.750
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.719
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.719
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.703
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.703
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.703
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.703