Pavir.Fb00544 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Fb00544 T324227_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00544.1.p Sigma 70 260 330

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.986
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.986
Si013608m.g Setaria italica Si013608m.g N 0.986
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.986
OB08G14150 Oryza brachyantha OB08G14150 N 0.986
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.972
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.972
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.972
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.972
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.972
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.972
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.972
OS08G0163400 Oryza sativa OS08G0163400 N 0.972
OBART08G03910 Oryza barthii OBART08G03910 N 0.972
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.972
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.972
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.972
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.972
F775_32229 Aegilops tauschii F775_32229 N 0.972
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.972
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.964
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.958
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.930
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.845
MDP0000939377 Malus domestica MDP0000939377 N 0.845
MDP0000934360 Malus domestica MDP0000934360 N 0.845
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.831
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.831
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.831
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.831
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.831
SIGA Arabidopsis thaliana AT1G64860 N 0.831
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.831
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.831
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.831
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.831
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.817
PK03826.1 Cannabis sativa PK03826.1 N 0.817
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.817
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.817
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.817
30148.m001468 Ricinus communis 30148.m001468 N 0.817
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.817
Pm019567 Prunus mume Pm019567 N 0.817
Bra008513 Brassica rapa Bra008513 N 0.817
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.817
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.817
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.817
Ca_22625 Cicer arietinum Ca_22625 N 0.817
Bo2g097550 Brassica oleracea Bo2g097550 N 0.817
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.803
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.803
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.803
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.803
Cla006897 Citrullus lanatus Cla006897 N 0.803
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.803
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.803
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.803
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.803
SIGA Vitis vinifera VIT_16s0039g00660 N 0.803
Ca_22622 Cicer arietinum Ca_22622 N 0.803
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.789
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.789
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.789
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.789
TCM_025640 Theobroma cacao TCM_025640 N 0.789
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.789
mgf004750m Mimulus guttatus mgf004750m N 0.789
mgf016433m Mimulus guttatus mgf016433m N 0.789
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.789
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.775
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.775
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.775