Phatr3_J6025 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J6025 T331933_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J6025.p1 Sox 47 116
Phatr3_J6025.p1 Sox 133 201

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.6.966.1 Fragilariopsis cylindrus e_gw1.6.966.1 N 0.576
estExt_Genewise1Plus.C_21097 Fragilariopsis cylindrus estExt_Genewise1Plus.C_21097 N 0.450
maker-pve_contig_787-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_787-fgenesh-gene-0.0 N 0.448
Phatr3_J16581 Phaeodactylum tricornutum Phatr3_J16581 N 0.436
PYU1_G009116 Pythium ultimum PYU1_G009116 N 0.422
e_gw1.7.735.1 Fragilariopsis cylindrus e_gw1.7.735.1 N 0.421