Phatr3_J8737 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J8737 T331936_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J8737.p1 Sox 548 616

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZFP5 Arabidopsis thaliana AT1G10480 D 0.000
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.000
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.000
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.000
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.000
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.000
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.000
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.000
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.000
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.000
Carubv10003685m.g Capsella rubella Carubv10003685m.g I 0.000
30045.m000471 Ricinus communis 30045.m000471 I 0.000
Pm008291 Prunus mume Pm008291 I 0.000
Ca_08116 Cicer arietinum Ca_08116 I 0.000
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.000
TCM_044725 Theobroma cacao TCM_044725 I 0.000
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.000
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.000
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.000
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.000
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.000
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.000
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.000
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.000
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.000
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.000
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.000
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.000
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.000
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.000
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.000
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.000
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.000
PK10012.1 Cannabis sativa PK10012.1 I 0.000
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.000
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.000
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.000
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.000
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.000
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.000
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.000
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.000
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.000
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.000
MDP0000121370 Malus domestica MDP0000121370 I 0.000
MDP0000165710 Malus domestica MDP0000165710 I 0.000
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.000
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.000
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.000
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.000
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.000
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.000
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.000
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.000
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.000
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.000
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.000
F775_42450 Aegilops tauschii F775_42450 I 0.000
F775_01070 Aegilops tauschii F775_01070 I 0.000
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.000
GIS2 Arabidopsis thaliana AT5G06650 I 0.000
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.000
Bo2g007320 Brassica oleracea Bo2g007320 I 0.000
Bo8g109510 Brassica oleracea Bo8g109510 I 0.000
Bo9g011450 Brassica oleracea Bo9g011450 I 0.000
Bo9g166240 Brassica oleracea Bo9g166240 I 0.000
Bra008787 Brassica rapa Bra008787 I 0.000
Bra028724 Brassica rapa Bra028724 I 0.000
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.000
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.000
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.000
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.000
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.000
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.000
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.000
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.000
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.000
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.000
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.000
Si028367m.g Setaria italica Si028367m.g I 0.000
Si031489m.g Setaria italica Si031489m.g I 0.000
OS09G0431900 Oryza sativa OS09G0431900 I 0.000
Si037914m.g Setaria italica Si037914m.g I 0.000
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.000
OB09G17800 Oryza brachyantha OB09G17800 I 0.000
OBART09G11250 Oryza barthii OBART09G11250 I 0.000
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.000
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.000
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.000
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.000
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.000
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.000
MTR_2g067740 Medicago truncatula MTR_2g067740 N 0.000
Ca_23376 Cicer arietinum Ca_23376 N 0.000