Carubv10007590m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10007590m.g T334416_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.566 0.766
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.566 0.766
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007590m Sox 142 210
Carubv10007590m Sox 259 325
Carubv10007590m Sox 383 451

Links

Other Sox family TFs
Other Capsella rubella TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000016851 Ailuropoda melanoleuca ENSAMEG00000016851 I 0.000
ENSACAG00000022533 Anolis carolinensis ENSACAG00000022533 I 0.000
ENSBTAP00000001420-D1 Bos grunniens ENSBTAP00000001420-D1 I 0.000
TP53 Bos taurus ENSBTAG00000001069 I 0.000
TP53 Callithrix jacchus ENSCJAG00000014978 I 0.000
TP53 Canis familiaris ENSCAFG00000016714 I 0.000
TP53 Cavia porcellus ENSCPOG00000014252 I 0.000
Cmyd_10000491 Chelonia mydas Cmyd_10000491 I 0.000
ENSCSAG00000011345 Chlorocebus sabaeus ENSCSAG00000011345 I 0.000
tp53 Danio rerio ENSDARG00000035559 I 0.000
ENSETEG00000008987 Echinops telfairi ENSETEG00000008987 I 0.000
TP53 Equus caballus ENSECAG00000008126 I 0.000
TP53 Erinaceus europaeus ENSEEUG00000014573 I 0.000
TP53 Felis catus ENSFCAG00000009623 I 0.000
TP53 Gorilla gorilla ENSGGOG00000009786 I 0.000
TP53 Homo sapiens ENSG00000141510 D 0.000
ENSSTOG00000022774 Ictidomys tridecemlineatus ENSSTOG00000022774 I 0.000
ENSLACG00000014014 Latimeria chalumnae ENSLACG00000014014 N 0.000
ENSLOCG00000013832 Lepisosteus oculatus ENSLOCG00000013832 N 0.000
ENSLAFG00000007483 Loxodonta africana ENSLAFG00000007483 I 0.000
ENSLAFG00000032042 Loxodonta africana ENSLAFG00000032042 I 0.000
ENSLAFG00000030880 Loxodonta africana ENSLAFG00000030880 I 0.000
ENSP00000269305 Macaca fascicularis ENSP00000269305 I 0.000
TP53 Macaca mulatta ENSMMUG00000008639 I 0.000
ENSMEUG00000013135 Macropus eugenii ENSMEUG00000013135 I 0.000
TP53 Microcebus murinus ENSMICG00000014853 I 0.000
ENSMPUG00000009017 Mustela putorius furo ENSMPUG00000009017 I 0.000
Trp53 Mus musculus ENSMUSG00000059552 D 0.000
Myotis_brandtii_TP53_10021059 Myotis brandtii Myotis_brandtii_TP53_10021059 I 0.000
ENSMLUG00000025140 Myotis lucifugus ENSMLUG00000025140 I 0.000
ENSMLUG00000006411 Myotis lucifugus ENSMLUG00000006411 I 0.000
ENSNLEG00000009730 Nomascus leucogenys ENSNLEG00000009730 I 0.000
TP53 Ochotona princeps ENSOPRG00000006441 I 0.000
ENSOCUG00000001138 Oryctolagus cuniculus ENSOCUG00000001138 I 0.000
ENSOCUG00000022109 Oryctolagus cuniculus ENSOCUG00000022109 I 0.000
TP53 Otolemur garnettii ENSOGAG00000016871 I 0.000
ENSOARG00000015571 Ovis aries ENSOARG00000015571 I 0.000
TP53 Pan troglodytes ENSPTRG00000008703 I 0.000
ENSPANG00000024061 Papio anubis ENSPANG00000024061 I 0.000
ENSPSIG00000013302 Pelodiscus sinensis ENSPSIG00000013302 I 0.000
Pvit_02042 Pogona vitticeps Pvit_02042 N 0.000
ENSPPYG00000007934 Pongo abelii ENSPPYG00000007934 I 0.000
TP53 Procavia capensis ENSPCAG00000012725 I 0.000
Tp53 Rattus norvegicus ENSRNOG00000010756 I 0.000
LOC100910954 Rattus norvegicus ENSRNOG00000046657 I 0.000
ENSSHAG00000015510 Sarcophilus harrisii ENSSHAG00000015510 I 0.000
TP53 Sorex araneus ENSSARG00000006206 I 0.000
TP53 Sus scrofa ENSSSCG00000017950 I 0.000
TP53 Tursiops truncatus ENSTTRG00000010250 I 0.000
tp53.L Xenopus laevis XB-GENE-6252168 N 0.000
tp53 Xenopus tropicalis XB-GENE-484286 N 0.000