CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.C_Chr_03000283
(
Micromonas sp RCC299
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh2_pg.C_Chr_03000283
T334507_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
99502
Sox
1055
1098
EEKPPTAFSLFVKEHFAATKERMPAGTPHKNIMKELSGLWKSGG
Links
Other
Sox
family TFs
Other
Micromonas sp RCC299
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI006465
Acyrthosiphon pisum
ACYPI006465
N
0.498
CAOG_02676
Capsaspora owczarzaki
CAOG_02676
N
0.438
CapteG178344
Capitella teleta
CapteG178344
N
0.433
CC1G_06617
Coprinopsis cinerea
CC1G_06617
N
0.507
CNG00580
Cryptococcus neoformans
CNG00580
N
0.556
DAPPUDRAFT_306626
Daphnia pulex
DAPPUDRAFT_306626
N
0.437
EMIHUDRAFT_117867
Emiliania huxleyi
EMIHUDRAFT_117867
I
0.507
ENSPMAG00000002918
Petromyzon marinus
ENSPMAG00000002918
N
0.462
e_gw1.1.2342.1
Heterobasidion annosum
e_gw1.1.2342.1
I
0.432
fgenesh1_pm.9__12
Bigelowiella natans
fgenesh1_pm.9__12
N
0.503
fgenesh2_pg.scaffold_5000103
Monosiga brevicollis
fgenesh2_pg.scaffold_5000103
N
0.515
fgeneshHS_pg.scaffold_50000080
Naegleria gruberi
fgeneshHS_pg.scaffold_50000080
N
0.466
GLOTRDRAFT_11089
Gloeophyllum trabeum
GLOTRDRAFT_11089
I
0.434
GRMZM2G024247
Zea mays
GRMZM2G024247
N
0.442
GUITHDRAFT_163519
Guillardia theta
GUITHDRAFT_163519
I
0.422
HETIRDRAFT_308278
Heterobasidion irregulare
HETIRDRAFT_308278
I
0.432
K443DRAFT_87716
Laccaria amethystina
K443DRAFT_87716
N
0.467
L804_03818
Cryptococcus gattii
L804_03818
N
0.492
LACBIDRAFT_301226
Laccaria bicolor
LACBIDRAFT_301226
N
0.433
LDEC009506
Leptinotarsa decemlineata
LDEC009506
N
0.510
LotgiG105193
Lottia gigantea
LotgiG105193
N
0.483
M404DRAFT_998370
Pisolithus tinctorius
M404DRAFT_998370
N
0.505
M407DRAFT_16670
Tulasnella calospora
M407DRAFT_16670
N
0.423
MDP0000392251
Malus domestica
MDP0000392251
N
0.417
MGG_00866
Magnaporthe oryzae
MGG_00866
N
0.441
Moror_16065
Moniliophthora roreri
Moror_16065
I
0.439
MYCTH_2308522
Myceliophthora thermophila
MYCTH_2308522
I
0.459
NV14872
Nasonia vitripennis
NV14872
N
0.420
PFL1_06190
Pseudozyma flocculosa
PFL1_06190
I
0.422
PISMIDRAFT_671062
Pisolithus microcarpus
PISMIDRAFT_671062
I
0.436
PLICRDRAFT_179042
Plicaturopsis crispa
PLICRDRAFT_179042
I
0.428
PODANS_5_8400
Podospora anserina
PODANS_5_8400
N
0.420
PTSG_02585
Salpingoeca rosetta
PTSG_02585
N
0.452
SCHCODRAFT_73620
Schizophyllum commune
SCHCODRAFT_73620
N
0.421
SOCG_00309
Schizosaccharomyces octosporus
SOCG_00309
N
0.418
SPBC19G7.04
Schizosaccharomyces pombe
SPBC19G7.04
N
0.467
SPOG_02196
Schizosaccharomyces cryophilus
SPOG_02196
N
0.438
TC012902
Tribolium castaneum
TC012902
N
0.515
TCM_029514
Theobroma cacao
TCM_029514
N
0.419
TriadG56122
Trichoplax adhaerens
TriadG56122
N
0.453
TRIVIDRAFT_16124
Trichoderma virens
TRIVIDRAFT_16124
N
0.427