CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Tbr1
(
Rattus norvegicus
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSRNOG00000005049
T340427_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbr1
M01028_2.00
Mus musculus
DTVRCAMNYH
DRNKTGYBAH
PBM
SebePedros et al.(2013)
pTH2659
0.857
0.956
TBR1
M03560_2.00
Homo sapiens
AGGTGTGAAN
NTTCACACCT
SELEX
Jolma et al.(2013)
TBR1_1
0.857
0.956
TBR1
M03561_2.00
Homo sapiens
RAGGTGTGAAH
DTTCACACCTY
SELEX
Jolma et al.(2013)
TBR1_2
0.857
0.956
Eomes
M00215_2.00
Mus musculus
RDGTGYBANN
NNTVRCACHY
PBM
Badis et al.(2009)
Eomes_0921
0.801
0.831
EOMES
M03563_2.00
Homo sapiens
DAGGTGTGAWNNN
NNNWTCACACCTH
SELEX
Jolma et al.(2013)
EOMES_1
0.801
0.825
EOMES
M03564_2.00
Homo sapiens
TVACACNTNNNDRNGTGTGA
TCACACNYHNNNANGTGTBA
SELEX
Jolma et al.(2013)
EOMES_2
0.801
0.825
EOMES
M02752_2.00
Homo sapiens
AGGTGTGAW
WTCACACCT
SELEX
Jolma et al.(2010)
EOMES_monomer
0.801
0.825
EOMES
M05807_2.00
Homo sapiens
DAGGTGTGAN
NTCACACCTH
SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX
0.801
0.825
EOMES
M09647_2.00
Homo sapiens
ARGTGWKAAN
NTTMWCACYT
Misc
Heinz et al.(2010)
H9-Eomes_GSE26097
0.801
0.825
EOMES
M05808_2.00
Homo sapiens
NABGTGYKAH
DTMRCACVTN
SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX
0.801
0.825
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000059530
T-box
206
393
VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQTFTFPETQFIAVTAYQNTDVRKLGAGHGPFAKGFRK
Links
Other
T-box
family TFs
Other
Rattus norvegicus
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSSHAG00000016616
Sarcophilus harrisii
ENSSHAG00000016616
I
0.857
TBR1
Loxodonta africana
ENSLAFG00000011541
I
0.857
TBR1
Pan troglodytes
ENSPTRG00000012576
I
0.857
ENSPANG00000018688
Papio anubis
ENSPANG00000018688
I
0.857
TBR1
Gorilla gorilla
ENSGGOG00000015752
I
0.857
ENSFALG00000004466
Ficedula albicollis
ENSFALG00000004466
I
0.857
TBR1
Homo sapiens
ENSG00000136535
D
0.857
ENSSTOG00000023843
Ictidomys tridecemlineatus
ENSSTOG00000023843
I
0.857
ENSPSIG00000004373
Pelodiscus sinensis
ENSPSIG00000004373
I
0.857
TBR1
Macaca mulatta
ENSMMUG00000011911
I
0.857
ENSOARG00000006620
Ovis aries
ENSOARG00000006620
I
0.857
TBR1
Oryctolagus cuniculus
ENSOCUG00000005884
I
0.857
TBR1
Otolemur garnettii
ENSOGAG00000004936
I
0.857
ENSNLEG00000002040
Nomascus leucogenys
ENSNLEG00000002040
I
0.857
Tbr1
Mus musculus
ENSMUSG00000035033
D
0.857
TBR1
Monodelphis domestica
ENSMODG00000005353
I
0.857
ENSMPUG00000000551
Mustela putorius furo
ENSMPUG00000000551
I
0.857
ENSPPYG00000012882
Pongo abelii
ENSPPYG00000012882
I
0.857
TBR1
Dasypus novemcinctus
ENSDNOG00000009816
I
0.857
TBR1
Tupaia belangeri
ENSTBEG00000014183
I
0.857
TBR1
Canis familiaris
ENSCAFG00000009984
I
0.857
TBR1
Callithrix jacchus
ENSCJAG00000005603
I
0.857
ENSCPOG00000005881
Cavia porcellus
ENSCPOG00000005881
I
0.857
Pvit_15940
Pogona vitticeps
Pvit_15940
I
0.857
TBR1
Bos taurus
ENSBTAG00000021692
I
0.857
ENSAMEG00000012360
Ailuropoda melanoleuca
ENSAMEG00000012360
I
0.857
tbr1
Xenopus tropicalis
XB-GENE-942241
I
0.857
ENSP00000374205
Macaca fascicularis
ENSP00000374205
I
0.857
ENSCSAG00000015663
Chlorocebus sabaeus
ENSCSAG00000015663
I
0.857
TBR1
Ochotona princeps
ENSOPRG00000005150
I
0.855
ENSLACG00000003893
Latimeria chalumnae
ENSLACG00000003893
I
0.855
TBR1
Felis catus
ENSFCAG00000025073
I
0.854
ENSVPAG00000002720
Vicugna pacos
ENSVPAG00000002720
I
0.854
Alligator_sinensis_CCG012002.1
Alligator sinensis
Alligator_sinensis_CCG012002.1
I
0.850
Myotis_brandtii_SLC4A10_10035570
Myotis brandtii
Myotis_brandtii_SLC4A10_10035570
I
0.850
ENSP00000374205-D1
Bos grunniens
ENSP00000374205-D1
I
0.850
ENSLOCG00000008583
Lepisosteus oculatus
ENSLOCG00000008583
I
0.848
TBR1
Myotis lucifugus
ENSMLUG00000006008
I
0.845
ENSAMXG00000009990
Astyanax mexicanus
ENSAMXG00000009990
I
0.845
tbr1b
Danio rerio
ENSDARG00000004712
I
0.845
ENSXMAG00000011427
Xiphophorus maculatus
ENSXMAG00000011427
I
0.839
ENSPFOG00000017461
Poecilia formosa
ENSPFOG00000017461
I
0.839
tbr1b
Oryzias latipes
ENSORLG00000016828
I
0.839
tbr1b
Gasterosteus aculeatus
ENSGACG00000005648
I
0.839
ENSONIG00000008933
Oreochromis niloticus
ENSONIG00000008933
I
0.839
ENSGMOG00000014981
Gadus morhua
ENSGMOG00000014981
I
0.833
tbr1b
Takifugu rubripes
ENSTRUG00000005183
I
0.818
ENSLOCG00000013335
Lepisosteus oculatus
ENSLOCG00000013335
I
0.818
eomes
Xenopus tropicalis
XB-GENE-479769
I
0.810
eomes.S
Xenopus laevis
XB-GENE-6487182
I
0.810
ENSAMXG00000010492
Astyanax mexicanus
ENSAMXG00000010492
I
0.810
EOMES
Anolis carolinensis
ENSACAG00000014201
I
0.810
tbx21
Danio rerio
ENSDARG00000004473
I
0.810
EOMES
Gallus gallus
ENSGALG00000027247
I
0.810
ENSFALG00000009181
Ficedula albicollis
ENSFALG00000009181
I
0.810
Ogr17175
Ophisaurus gracilis
Ogr17175
I
0.810
ENSPSIG00000005360
Pelodiscus sinensis
ENSPSIG00000005360
I
0.810
ENSLOCG00000002398
Lepisosteus oculatus
ENSLOCG00000002398
I
0.808
tbx21
Tetraodon nigroviridis
ENSTNIG00000010103
I
0.807
tbx21
Takifugu rubripes
ENSTRUG00000012995
I
0.807
ENSONIG00000018223
Oreochromis niloticus
ENSONIG00000018223
I
0.807
ENSPFOG00000018019
Poecilia formosa
ENSPFOG00000018019
I
0.806
ENSXMAG00000013655
Xiphophorus maculatus
ENSXMAG00000013655
I
0.806
eomesb
Tetraodon nigroviridis
ENSTNIG00000019116
I
0.805
ENSONIG00000007180
Oreochromis niloticus
ENSONIG00000007180
I
0.805
ENSPANG00000011539
Papio anubis
ENSPANG00000011539
I
0.801
ENSSTOG00000020918
Ictidomys tridecemlineatus
ENSSTOG00000020918
I
0.801
ENSSSCG00000011219
Sus scrofa
ENSSSCG00000011219
I
0.801
ENSSSCG00000022626
Sus scrofa
ENSSSCG00000022626
I
0.801
ENSSHAG00000017378
Sarcophilus harrisii
ENSSHAG00000017378
I
0.801
EOMES
Pan troglodytes
ENSPTRG00000014705
I
0.801
ENSPPYG00000014055
Pongo abelii
ENSPPYG00000014055
I
0.801
EOMES
Procavia capensis
ENSPCAG00000013650
I
0.801
ENSOCUG00000000451
Oryctolagus cuniculus
ENSOCUG00000000451
I
0.801
EOMES
Gorilla gorilla
ENSGGOG00000008358
I
0.801
EOMES
Loxodonta africana
ENSLAFG00000004142
I
0.801
ENSAMEG00000012731
Ailuropoda melanoleuca
ENSAMEG00000012731
I
0.801
ENSMICG00000015729
Microcebus murinus
ENSMICG00000015729
I
0.801
EOMES
Homo sapiens
ENSG00000163508
D
0.801
EOMES
Erinaceus europaeus
ENSEEUG00000005958
I
0.801
EOMES
Bos taurus
ENSBTAG00000016920
I
0.801
EOMES
Canis familiaris
ENSCAFG00000005510
I
0.801
EOMES
Cavia porcellus
ENSCPOG00000004381
I
0.801
Eomes
Dipodomys ordii
ENSDORG00000016346
I
0.801
ENSMMUG00000001904
Macaca mulatta
ENSMMUG00000001904
I
0.801
EOMES
Felis catus
ENSFCAG00000003602
I
0.801
EOMES
Otolemur garnettii
ENSOGAG00000030966
I
0.801
ENSNLEG00000004050
Nomascus leucogenys
ENSNLEG00000004050
I
0.801
ENSOARG00000014467
Ovis aries
ENSOARG00000014467
I
0.801
ENSMPUG00000011981
Mustela putorius furo
ENSMPUG00000011981
I
0.801
Eomes
Mus musculus
ENSMUSG00000032446
D
0.801
ENSPFOG00000017938
Poecilia formosa
ENSPFOG00000017938
I
0.800
eomesb
Takifugu rubripes
ENSTRUG00000008966
I
0.800
Alligator_sinensis_CCG014450.1
Alligator sinensis
Alligator_sinensis_CCG014450.1
I
0.799
EOMES
Equus caballus
ENSECAG00000021052
I
0.798
EOMES
Myotis lucifugus
ENSMLUG00000001462
I
0.798
EOMES
Callithrix jacchus
ENSCJAG00000004263
I
0.797
eomesb
Oryzias latipes
ENSORLG00000005393
I
0.787
eomes.L
Xenopus laevis
XB-GENE-865305
I
0.787
eomesa
Gasterosteus aculeatus
ENSGACG00000003160
I
0.786
ENSGMOG00000002634
Gadus morhua
ENSGMOG00000002634
I
0.786
eomesb
Danio rerio
ENSDARG00000104243
I
0.785
eomesa
Oryzias latipes
ENSORLG00000002320
I
0.783
AAI66068
Xenopus tropicalis
AAI66068
I
0.783
eomesa
Danio rerio
ENSDARG00000006640
I
0.783
ENSPFOG00000006471
Poecilia formosa
ENSPFOG00000006471
I
0.783
ENSXMAG00000000528
Xiphophorus maculatus
ENSXMAG00000000528
I
0.783
eomesb
Gasterosteus aculeatus
ENSGACG00000006345
I
0.783
eomesa
Tetraodon nigroviridis
ENSTNIG00000017582
I
0.783
ENSAMXG00000012247
Astyanax mexicanus
ENSAMXG00000012247
I
0.783
eomesa
Takifugu rubripes
ENSTRUG00000005361
I
0.783
ENSONIG00000019678
Oreochromis niloticus
ENSONIG00000019678
I
0.780
Brh_R007719
Buceros rhinoceros
Brh_R007719
I
0.780
tbx21
Xenopus tropicalis
XB-GENE-479103
I
0.780
ENSXMAG00000014284
Xiphophorus maculatus
ENSXMAG00000014284
I
0.778
tbr1b
Tetraodon nigroviridis
ENSTNIG00000016497
I
0.778
ENSP00000388620
Macaca fascicularis
ENSP00000388620
I
0.774
tbr1a
Danio rerio
ENSDARG00000076259
I
0.772
ENSGMOG00000003675
Gadus morhua
ENSGMOG00000003675
I
0.762
ENSP00000388620-D1
Bos grunniens
ENSP00000388620-D1
I
0.762
Sakowv30002752m.g
Saccoglossus kowalevskii
Sakowv30002752m.g
I
0.752
ENSPMAG00000003985
Petromyzon marinus
ENSPMAG00000003985
I
0.752
ENSLACG00000016985
Latimeria chalumnae
ENSLACG00000016985
I
0.742
fgenesh2_pg.scaffold_55000054
Branchiostoma floridae
fgenesh2_pg.scaffold_55000054
I
0.736
estExt_fgenesh2_kg.C_1840001
Branchiostoma floridae
estExt_fgenesh2_kg.C_1840001
I
0.736
TBR1
Erinaceus europaeus
ENSEEUG00000011336
I
0.465
ENSMEUG00000014480
Macropus eugenii
ENSMEUG00000014480
I
0.242
ENSECAG00000002502
Equus caballus
ENSECAG00000002502
I
0.156