Tbr1 (Rattus norvegicus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSRNOG00000005049 T340427_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbr1
M01028_2.00
Mus musculus
DTVRCAMNYH

DRNKTGYBAH
PBM
SebePedros et al.(2013)
pTH2659
0.857 0.956
TBR1
M03560_2.00
Homo sapiens
AGGTGTGAAN

NTTCACACCT
SELEX
Jolma et al.(2013)
TBR1_1
0.857 0.956
TBR1
M03561_2.00
Homo sapiens
RAGGTGTGAAH

DTTCACACCTY
SELEX
Jolma et al.(2013)
TBR1_2
0.857 0.956
Eomes
M00215_2.00
Mus musculus
RDGTGYBANN

NNTVRCACHY
PBM
Badis et al.(2009)
Eomes_0921
0.801 0.831
EOMES
M03563_2.00
Homo sapiens
DAGGTGTGAWNNN

NNNWTCACACCTH
SELEX
Jolma et al.(2013)
EOMES_1
0.801 0.825
EOMES
M03564_2.00
Homo sapiens
TVACACNTNNNDRNGTGTGA

TCACACNYHNNNANGTGTBA
SELEX
Jolma et al.(2013)
EOMES_2
0.801 0.825
EOMES
M02752_2.00
Homo sapiens
AGGTGTGAW

WTCACACCT
SELEX
Jolma et al.(2010)
EOMES_monomer
0.801 0.825
EOMES
M05807_2.00
Homo sapiens
DAGGTGTGAN

NTCACACCTH
SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX
0.801 0.825
EOMES
M09647_2.00
Homo sapiens
ARGTGWKAAN

NTTMWCACYT
Misc
Heinz et al.(2010)
H9-Eomes_GSE26097
0.801 0.825
EOMES
M05808_2.00
Homo sapiens
NABGTGYKAH

DTMRCACVTN
SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX
0.801 0.825
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000059530 T-box 206 393

Links

Other T-box family TFs
Other Rattus norvegicus TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSSHAG00000016616 Sarcophilus harrisii ENSSHAG00000016616 I 0.857
TBR1 Loxodonta africana ENSLAFG00000011541 I 0.857
TBR1 Pan troglodytes ENSPTRG00000012576 I 0.857
ENSPANG00000018688 Papio anubis ENSPANG00000018688 I 0.857
TBR1 Gorilla gorilla ENSGGOG00000015752 I 0.857
ENSFALG00000004466 Ficedula albicollis ENSFALG00000004466 I 0.857
TBR1 Homo sapiens ENSG00000136535 D 0.857
ENSSTOG00000023843 Ictidomys tridecemlineatus ENSSTOG00000023843 I 0.857
ENSPSIG00000004373 Pelodiscus sinensis ENSPSIG00000004373 I 0.857
TBR1 Macaca mulatta ENSMMUG00000011911 I 0.857
ENSOARG00000006620 Ovis aries ENSOARG00000006620 I 0.857
TBR1 Oryctolagus cuniculus ENSOCUG00000005884 I 0.857
TBR1 Otolemur garnettii ENSOGAG00000004936 I 0.857
ENSNLEG00000002040 Nomascus leucogenys ENSNLEG00000002040 I 0.857
Tbr1 Mus musculus ENSMUSG00000035033 D 0.857
TBR1 Monodelphis domestica ENSMODG00000005353 I 0.857
ENSMPUG00000000551 Mustela putorius furo ENSMPUG00000000551 I 0.857
ENSPPYG00000012882 Pongo abelii ENSPPYG00000012882 I 0.857
TBR1 Dasypus novemcinctus ENSDNOG00000009816 I 0.857
TBR1 Tupaia belangeri ENSTBEG00000014183 I 0.857
TBR1 Canis familiaris ENSCAFG00000009984 I 0.857
TBR1 Callithrix jacchus ENSCJAG00000005603 I 0.857
ENSCPOG00000005881 Cavia porcellus ENSCPOG00000005881 I 0.857
Pvit_15940 Pogona vitticeps Pvit_15940 I 0.857
TBR1 Bos taurus ENSBTAG00000021692 I 0.857
ENSAMEG00000012360 Ailuropoda melanoleuca ENSAMEG00000012360 I 0.857
tbr1 Xenopus tropicalis XB-GENE-942241 I 0.857
ENSP00000374205 Macaca fascicularis ENSP00000374205 I 0.857
ENSCSAG00000015663 Chlorocebus sabaeus ENSCSAG00000015663 I 0.857
TBR1 Ochotona princeps ENSOPRG00000005150 I 0.855
ENSLACG00000003893 Latimeria chalumnae ENSLACG00000003893 I 0.855
TBR1 Felis catus ENSFCAG00000025073 I 0.854
ENSVPAG00000002720 Vicugna pacos ENSVPAG00000002720 I 0.854
Alligator_sinensis_CCG012002.1 Alligator sinensis Alligator_sinensis_CCG012002.1 I 0.850
Myotis_brandtii_SLC4A10_10035570 Myotis brandtii Myotis_brandtii_SLC4A10_10035570 I 0.850
ENSP00000374205-D1 Bos grunniens ENSP00000374205-D1 I 0.850
ENSLOCG00000008583 Lepisosteus oculatus ENSLOCG00000008583 I 0.848
TBR1 Myotis lucifugus ENSMLUG00000006008 I 0.845
ENSAMXG00000009990 Astyanax mexicanus ENSAMXG00000009990 I 0.845
tbr1b Danio rerio ENSDARG00000004712 I 0.845
ENSXMAG00000011427 Xiphophorus maculatus ENSXMAG00000011427 I 0.839
ENSPFOG00000017461 Poecilia formosa ENSPFOG00000017461 I 0.839
tbr1b Oryzias latipes ENSORLG00000016828 I 0.839
tbr1b Gasterosteus aculeatus ENSGACG00000005648 I 0.839
ENSONIG00000008933 Oreochromis niloticus ENSONIG00000008933 I 0.839
ENSGMOG00000014981 Gadus morhua ENSGMOG00000014981 I 0.833
tbr1b Takifugu rubripes ENSTRUG00000005183 I 0.818
ENSLOCG00000013335 Lepisosteus oculatus ENSLOCG00000013335 I 0.818
eomes Xenopus tropicalis XB-GENE-479769 I 0.810
eomes.S Xenopus laevis XB-GENE-6487182 I 0.810
ENSAMXG00000010492 Astyanax mexicanus ENSAMXG00000010492 I 0.810
EOMES Anolis carolinensis ENSACAG00000014201 I 0.810
tbx21 Danio rerio ENSDARG00000004473 I 0.810
EOMES Gallus gallus ENSGALG00000027247 I 0.810
ENSFALG00000009181 Ficedula albicollis ENSFALG00000009181 I 0.810
Ogr17175 Ophisaurus gracilis Ogr17175 I 0.810
ENSPSIG00000005360 Pelodiscus sinensis ENSPSIG00000005360 I 0.810
ENSLOCG00000002398 Lepisosteus oculatus ENSLOCG00000002398 I 0.808
tbx21 Tetraodon nigroviridis ENSTNIG00000010103 I 0.807
tbx21 Takifugu rubripes ENSTRUG00000012995 I 0.807
ENSONIG00000018223 Oreochromis niloticus ENSONIG00000018223 I 0.807
ENSPFOG00000018019 Poecilia formosa ENSPFOG00000018019 I 0.806
ENSXMAG00000013655 Xiphophorus maculatus ENSXMAG00000013655 I 0.806
eomesb Tetraodon nigroviridis ENSTNIG00000019116 I 0.805
ENSONIG00000007180 Oreochromis niloticus ENSONIG00000007180 I 0.805
ENSPANG00000011539 Papio anubis ENSPANG00000011539 I 0.801
ENSSTOG00000020918 Ictidomys tridecemlineatus ENSSTOG00000020918 I 0.801
ENSSSCG00000011219 Sus scrofa ENSSSCG00000011219 I 0.801
ENSSSCG00000022626 Sus scrofa ENSSSCG00000022626 I 0.801
ENSSHAG00000017378 Sarcophilus harrisii ENSSHAG00000017378 I 0.801
EOMES Pan troglodytes ENSPTRG00000014705 I 0.801
ENSPPYG00000014055 Pongo abelii ENSPPYG00000014055 I 0.801
EOMES Procavia capensis ENSPCAG00000013650 I 0.801
ENSOCUG00000000451 Oryctolagus cuniculus ENSOCUG00000000451 I 0.801
EOMES Gorilla gorilla ENSGGOG00000008358 I 0.801
EOMES Loxodonta africana ENSLAFG00000004142 I 0.801
ENSAMEG00000012731 Ailuropoda melanoleuca ENSAMEG00000012731 I 0.801
ENSMICG00000015729 Microcebus murinus ENSMICG00000015729 I 0.801
EOMES Homo sapiens ENSG00000163508 D 0.801
EOMES Erinaceus europaeus ENSEEUG00000005958 I 0.801
EOMES Bos taurus ENSBTAG00000016920 I 0.801
EOMES Canis familiaris ENSCAFG00000005510 I 0.801
EOMES Cavia porcellus ENSCPOG00000004381 I 0.801
Eomes Dipodomys ordii ENSDORG00000016346 I 0.801
ENSMMUG00000001904 Macaca mulatta ENSMMUG00000001904 I 0.801
EOMES Felis catus ENSFCAG00000003602 I 0.801
EOMES Otolemur garnettii ENSOGAG00000030966 I 0.801
ENSNLEG00000004050 Nomascus leucogenys ENSNLEG00000004050 I 0.801
ENSOARG00000014467 Ovis aries ENSOARG00000014467 I 0.801
ENSMPUG00000011981 Mustela putorius furo ENSMPUG00000011981 I 0.801
Eomes Mus musculus ENSMUSG00000032446 D 0.801
ENSPFOG00000017938 Poecilia formosa ENSPFOG00000017938 I 0.800
eomesb Takifugu rubripes ENSTRUG00000008966 I 0.800
Alligator_sinensis_CCG014450.1 Alligator sinensis Alligator_sinensis_CCG014450.1 I 0.799
EOMES Equus caballus ENSECAG00000021052 I 0.798
EOMES Myotis lucifugus ENSMLUG00000001462 I 0.798
EOMES Callithrix jacchus ENSCJAG00000004263 I 0.797
eomesb Oryzias latipes ENSORLG00000005393 I 0.787
eomes.L Xenopus laevis XB-GENE-865305 I 0.787
eomesa Gasterosteus aculeatus ENSGACG00000003160 I 0.786
ENSGMOG00000002634 Gadus morhua ENSGMOG00000002634 I 0.786
eomesb Danio rerio ENSDARG00000104243 I 0.785
eomesa Oryzias latipes ENSORLG00000002320 I 0.783
AAI66068 Xenopus tropicalis AAI66068 I 0.783
eomesa Danio rerio ENSDARG00000006640 I 0.783
ENSPFOG00000006471 Poecilia formosa ENSPFOG00000006471 I 0.783
ENSXMAG00000000528 Xiphophorus maculatus ENSXMAG00000000528 I 0.783
eomesb Gasterosteus aculeatus ENSGACG00000006345 I 0.783
eomesa Tetraodon nigroviridis ENSTNIG00000017582 I 0.783
ENSAMXG00000012247 Astyanax mexicanus ENSAMXG00000012247 I 0.783
eomesa Takifugu rubripes ENSTRUG00000005361 I 0.783
ENSONIG00000019678 Oreochromis niloticus ENSONIG00000019678 I 0.780
Brh_R007719 Buceros rhinoceros Brh_R007719 I 0.780
tbx21 Xenopus tropicalis XB-GENE-479103 I 0.780
ENSXMAG00000014284 Xiphophorus maculatus ENSXMAG00000014284 I 0.778
tbr1b Tetraodon nigroviridis ENSTNIG00000016497 I 0.778
ENSP00000388620 Macaca fascicularis ENSP00000388620 I 0.774
tbr1a Danio rerio ENSDARG00000076259 I 0.772
ENSGMOG00000003675 Gadus morhua ENSGMOG00000003675 I 0.762
ENSP00000388620-D1 Bos grunniens ENSP00000388620-D1 I 0.762
Sakowv30002752m.g Saccoglossus kowalevskii Sakowv30002752m.g I 0.752
ENSPMAG00000003985 Petromyzon marinus ENSPMAG00000003985 I 0.752
ENSLACG00000016985 Latimeria chalumnae ENSLACG00000016985 I 0.742
fgenesh2_pg.scaffold_55000054 Branchiostoma floridae fgenesh2_pg.scaffold_55000054 I 0.736
estExt_fgenesh2_kg.C_1840001 Branchiostoma floridae estExt_fgenesh2_kg.C_1840001 I 0.736
TBR1 Erinaceus europaeus ENSEEUG00000011336 I 0.465
ENSMEUG00000014480 Macropus eugenii ENSMEUG00000014480 I 0.242
ENSECAG00000002502 Equus caballus ENSECAG00000002502 I 0.156