AMTR_s00357p00009370 (Amborella trichopoda)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AMTR_s00357p00009370 T343674_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.849 0.588
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.849 0.588
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.849 0.588
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.843 0.574
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.830 0.559
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.826 0.515
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.825 0.588
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM98545 TCP 1 71

Links

Other TCP family TFs
Other Amborella trichopoda TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.905
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.897
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.890
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.881
Cla023702 Citrullus lanatus Cla023702 I 0.880
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.878
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.876
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.874
AMTR_s00224p00009210 Amborella trichopoda AMTR_s00224p00009210 N 0.874
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.871
Bo1g129830 Brassica oleracea Bo1g129830 I 0.869
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.868
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.866
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.865
Bra021586 Brassica rapa Bra021586 I 0.862
MDP0000693146 Malus domestica MDP0000693146 I 0.860
Cla016530 Citrullus lanatus Cla016530 I 0.858
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.858
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.858
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.858
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.858
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.856
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.856
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.856
OBART02G32460 Oryza barthii OBART02G32460 I 0.854
Gorai.013G172800 Gossypium raimondii Gorai.013G172800 I 0.853
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.853
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.853
mgf021685m Mimulus guttatus mgf021685m I 0.852
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.852
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.850
Si002496m.g Setaria italica Si002496m.g I 0.849
TCP3 Arabidopsis thaliana AT1G53230 D 0.849
Ca_16227 Cicer arietinum Ca_16227 I 0.848
TCP10 Arabidopsis thaliana AT2G31070 I 0.848
MDP0000388684 Malus domestica MDP0000388684 I 0.848
Si004564m.g Setaria italica Si004564m.g I 0.846
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.846
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.845
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.845
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.844
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.843
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.843
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.843
TCM_031706 Theobroma cacao TCM_031706 I 0.843
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.843
Bo5g127500 Brassica oleracea Bo5g127500 I 0.841
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.841
MDP0000249507 Malus domestica MDP0000249507 I 0.840
Cla013734 Citrullus lanatus Cla013734 I 0.840
MDP0000149841 Malus domestica MDP0000149841 I 0.839
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.839
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.838
TCP3 Arabidopsis lyrata fgenesh2_kg.1__4401__AT1G53230.1 I 0.838
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.838
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.837
GSMUA_Achr6G14430_001 Musa acuminata GSMUA_Achr6G14430_001 I 0.837
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.836
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.835
OS01G0755500 Oryza sativa OS01G0755500 I 0.835
F775_07590 Aegilops tauschii F775_07590 I 0.835
Ca_02473 Cicer arietinum Ca_02473 I 0.835
GSMUA_Achr10G14340_001 Musa acuminata GSMUA_Achr10G14340_001 I 0.834
PK04257.1 Cannabis sativa PK04257.1 I 0.834
30192.m000545 Ricinus communis 30192.m000545 I 0.834
Pm029788 Prunus mume Pm029788 I 0.833
GSMUA_Achr5G06660_001 Musa acuminata GSMUA_Achr5G06660_001 I 0.833
MDP0000442611 Malus domestica MDP0000442611 I 0.833
Ciclev10008390m.g Citrus clementina Ciclev10008390m.g I 0.832
GLYMA12G33640 Glycine max GLYMA12G33640 I 0.832
Thhalv10011534m.g Eutrema salsugineum Thhalv10011534m.g I 0.832
GSMUA_Achr3G03540_001 Musa acuminata GSMUA_Achr3G03540_001 I 0.832
orange1.1g014360m.g Citrus sinensis orange1.1g014360m.g I 0.832
POPTR_0011s09890 Populus trichocarpa POPTR_0011s09890 I 0.831
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.831
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.830
Cucsa.273460 Cucumis sativus Cucsa.273460 I 0.830
Aquca_005_00099 Aquilegia coerulea Aquca_005_00099 I 0.830
Cla002460 Citrullus lanatus Cla002460 I 0.830
MLOC_12004 Hordeum vulgare MLOC_12004 I 0.830
Gorai.002G064500 Gossypium raimondii Gorai.002G064500 I 0.830
Eucgr.F01204 Eucalyptus grandis Eucgr.F01204 I 0.830
Solyc07g062680.1 Solanum lycopersicum Solyc07g062680.1 I 0.830
PGSC0003DMG400012396 Solanum tuberosum PGSC0003DMG400012396 I 0.830
TCP4 Arabidopsis thaliana AT3G15030 D 0.830
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.829
Ca_12866 Cicer arietinum Ca_12866 I 0.829
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.828
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.828
GLYMA12G20160 Glycine max GLYMA12G20160 I 0.828
PK12847.1 Cannabis sativa PK12847.1 I 0.828
Ca_11295 Cicer arietinum Ca_11295 I 0.827
Carubv10009348m.g Capsella rubella Carubv10009348m.g I 0.827
Cagra.1472s0007 Capsella grandiflora Cagra.1472s0007 I 0.827
Bostr.0124s0115 Boechera stricta Bostr.0124s0115 I 0.827
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.826
TCP10 Vitis vinifera VIT_12s0028g02520 I 0.826
MTR_2g078200 Medicago truncatula MTR_2g078200 I 0.826
Cagra.0007s0045 Capsella grandiflora Cagra.0007s0045 I 0.826
PRUPE_ppa007094mg Prunus persica PRUPE_ppa007094mg I 0.825
OS01G0213800 Oryza sativa OS01G0213800 D 0.825
POPTR_0019s12110 Populus trichocarpa POPTR_0019s12110 I 0.825
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.825
OBART01G07230 Oryza barthii OBART01G07230 I 0.825
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.825
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.825
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.825
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.825
PCF5 Oryza indica BGIOSGA002128 I 0.825
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.825
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.825
29646.m001100 Ricinus communis 29646.m001100 I 0.825
cassava35669.valid.m1 Manihot esculenta cassava35669.valid.m1 I 0.825
MDP0000130524 Malus domestica MDP0000130524 I 0.824
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.824
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.824
MDP0000617746 Malus domestica MDP0000617746 I 0.824
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.824
AMTR_s00133p00053750 Amborella trichopoda AMTR_s00133p00053750 I 0.824
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.824
MDP0000202241 Malus domestica MDP0000202241 I 0.824
MDP0000199422 Malus domestica MDP0000199422 I 0.824
MDP0000373350 Malus domestica MDP0000373350 I 0.824
MDP0000253526 Malus domestica MDP0000253526 I 0.824
Bra027284 Brassica rapa Bra027284 I 0.823
Bo3g066540 Brassica oleracea Bo3g066540 I 0.823
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.823
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.823
Carubv10013851m.g Capsella rubella Carubv10013851m.g I 0.823
Bostr.28625s0206 Boechera stricta Bostr.28625s0206 I 0.823
mgf002386m Mimulus guttatus mgf002386m I 0.822