MDP0000388684 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000388684 T344945_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.894 0.727
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.887 0.691
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.887 0.691
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.886 0.691
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.886 0.691
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.836 0.673
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.833 0.564
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.829 0.673
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000388684 TCP 21 75

Links

Other TCP family TFs
Other Malus domestica TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000202241 Malus domestica MDP0000202241 I 0.972
MDP0000199422 Malus domestica MDP0000199422 I 0.970
MDP0000130524 Malus domestica MDP0000130524 I 0.970
MDP0000373350 Malus domestica MDP0000373350 I 0.970
MDP0000253526 Malus domestica MDP0000253526 I 0.966
MDP0000617746 Malus domestica MDP0000617746 I 0.966
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.933
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.930
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.919
Si002496m.g Setaria italica Si002496m.g I 0.917
MDP0000594000 Malus domestica MDP0000594000 I 0.910
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.906
Cla010936 Citrullus lanatus Cla010936 I 0.905
OBART05G22490 Oryza barthii OBART05G22490 I 0.904
F775_18470 Aegilops tauschii F775_18470 I 0.902
Aquca_002_00878 Aquilegia coerulea Aquca_002_00878 I 0.897
Solyc03g115010.1 Solanum lycopersicum Solyc03g115010.1 I 0.897
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.896
Lus10032984.g Linum usitatissimum Lus10032984.g I 0.895
GLYMA19G03786 Glycine max GLYMA19G03786 I 0.894
PK10344.1 Cannabis sativa PK10344.1 D 0.894
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.894
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.893
Bra001032 Brassica rapa Bra001032 I 0.892
MDP0000320363 Malus domestica MDP0000320363 I 0.889
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.889
Bo3g055460 Brassica oleracea Bo3g055460 I 0.889
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.887
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.887
PTF1 Arabidopsis lyrata fgenesh2_kg.3__146__AT3G02150.2 I 0.887
TCP13 Arabidopsis thaliana AT3G02150 D 0.887
Cagra.1365s0013 Capsella grandiflora Cagra.1365s0013 I 0.886
TCP17 Arabidopsis thaliana AT5G08070 D 0.886
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.886
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.884
Gorai.006G009800 Gossypium raimondii Gorai.006G009800 I 0.884
29905.m000443 Ricinus communis 29905.m000443 I 0.883
Carubv10001730m.g Capsella rubella Carubv10001730m.g I 0.883
LPERR01G27380 Leersia perrieri LPERR01G27380 I 0.880
PDK_20s1781021g002 Phoenix dactylifera PDK_20s1781021g002 I 0.879
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.879
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.877
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.877
Ca_24948 Cicer arietinum Ca_24948 I 0.875
Si022833m.g Setaria italica Si022833m.g I 0.874
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.873
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.872
GSMUA_Achr6G27420_001 Musa acuminata GSMUA_Achr6G27420_001 I 0.871
BGIOSGA009051 Oryza indica BGIOSGA009051 N 0.871
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.870
MDP0000534647 Malus domestica MDP0000534647 I 0.870
mgf006703m Mimulus guttatus mgf006703m I 0.870
OPUNC01G30950 Oryza punctata OPUNC01G30950 I 0.869
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.869
AMTR_s00154p00072430 Amborella trichopoda AMTR_s00154p00072430 I 0.868
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.868
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.867
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.867
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.866
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.866
ONIVA06G04550 Oryza nivara ONIVA06G04550 N 0.865
Bra005967 Brassica rapa Bra005967 I 0.864
Bo3g004670 Brassica oleracea Bo3g004670 I 0.864
GLYMA06G22240 Glycine max GLYMA06G22240 I 0.864
POPTR_0004s11510 Populus trichocarpa POPTR_0004s11510 I 0.864
Cucsa.215290 Cucumis sativus Cucsa.215290 I 0.863
SapurV1A.0795s0080 Salix purpurea SapurV1A.0795s0080 I 0.863
SapurV1A.0323s0010 Salix purpurea SapurV1A.0323s0010 I 0.863
evm.TU.supercontig_14.188 Carica papaya evm.TU.supercontig_14.188 I 0.863
cassava29094.valid.m1 Manihot esculenta cassava29094.valid.m1 I 0.863
cassava30483.valid.m1 Manihot esculenta cassava30483.valid.m1 I 0.863
SapurV1A.4442s0010 Salix purpurea SapurV1A.4442s0010 I 0.863
TCM_018809 Theobroma cacao TCM_018809 I 0.863
SapurV1A.4443s0010 Salix purpurea SapurV1A.4443s0010 I 0.863
POPTR_0017s13050 Populus trichocarpa POPTR_0017s13050 I 0.863
SapurV1A.0901s0090 Salix purpurea SapurV1A.0901s0090 I 0.863
LjSGA_022391.1 Lotus japonicus LjSGA_022391.1 I 0.861
TCM_014288 Theobroma cacao TCM_014288 I 0.861
GLYMA17G08761 Glycine max GLYMA17G08761 I 0.861
PK17676.1 Cannabis sativa PK17676.1 I 0.861
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.861
mgf008626m Mimulus guttatus mgf008626m I 0.860
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.858
PRUPE_ppa007243mg Prunus persica PRUPE_ppa007243mg I 0.856
Pm016049 Prunus mume Pm016049 I 0.856
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I 0.855
PGSC0003DMG400024632 Solanum tuberosum PGSC0003DMG400024632 I 0.855
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.853
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.853
PTF1 Vitis vinifera VIT_14s0068g00330 I 0.853
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.853
Bo5g152840 Brassica oleracea Bo5g152840 I 0.853
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.852
mgf007729m Mimulus guttatus mgf007729m I 0.852
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.852
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.852
Gorai.012G048500 Gossypium raimondii Gorai.012G048500 I 0.851
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.851
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.850
MDP0000692406 Malus domestica MDP0000692406 I 0.850
Ciclev10020626m.g Citrus clementina Ciclev10020626m.g I 0.849
Bra039158 Brassica rapa Bra039158 I 0.849
orange1.1g017725m.g Citrus sinensis orange1.1g017725m.g I 0.849
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.849
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.849
AMTR_s00357p00009370 Amborella trichopoda AMTR_s00357p00009370 I 0.848
MDP0000249507 Malus domestica MDP0000249507 I 0.847
30138.m003959 Ricinus communis 30138.m003959 I 0.847
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.846
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.845
Eucgr.I02038 Eucalyptus grandis Eucgr.I02038 I 0.845
Ca_13216 Cicer arietinum Ca_13216 I 0.844
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.844
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.843
orange1.1g015799m.g Citrus sinensis orange1.1g015799m.g I 0.843
Ciclev10011887m.g Citrus clementina Ciclev10011887m.g I 0.843
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.841
Bra012990 Brassica rapa Bra012990 I 0.841
Bo7g098260 Brassica oleracea Bo7g098260 I 0.841
OBART02G32460 Oryza barthii OBART02G32460 I 0.839
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.838
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.836
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.836
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.835
SapurV1A.0546s0080 Salix purpurea SapurV1A.0546s0080 I 0.833
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.833
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.833
SapurV1A.2245s0020 Salix purpurea SapurV1A.2245s0020 I 0.833
chr4.CM0500.330.nd Lotus japonicus chr4.CM0500.330.nd I 0.832
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.832
Cucsa.113300 Cucumis sativus Cucsa.113300 I 0.831
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.830
mgf021685m Mimulus guttatus mgf021685m I 0.830
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.830
OS01G0763200 Oryza sativa OS01G0763200 I 0.829
TCP5 Arabidopsis thaliana AT5G60970 D 0.829
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.829
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.829
ORUFI01G35100 Oryza rufipogon ORUFI01G35100 I 0.829
BGIOSGA000770 Oryza indica BGIOSGA000770 I 0.829
MDP0000155433 Malus domestica MDP0000155433 I 0.829
ONIVA01G36230 Oryza nivara ONIVA01G36230 I 0.829
OBART01G31910 Oryza barthii OBART01G31910 I 0.829
ORGLA01G0259400 Oryza glaberrima ORGLA01G0259400 I 0.829
OMERI01G28950 Oryza meridionalis OMERI01G28950 I 0.828
MDP0000247249 Malus domestica MDP0000247249 I 0.824
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.824
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.823
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.823
Ca_24196 Cicer arietinum Ca_24196 I 0.823
Cla019340 Citrullus lanatus Cla019340 I 0.823
Cucsa.198300 Cucumis sativus Cucsa.198300 I 0.823
ORGLA02G0280100 Oryza glaberrima ORGLA02G0280100 N 0.823
MTR_3g026050 Medicago truncatula MTR_3g026050 I 0.823
Eucgr.B00608 Eucalyptus grandis Eucgr.B00608 I 0.823
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.823