OBART12G00580 (Oryza barthii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 OBART12G00580 T344078_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.914 0.600
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.892 0.537
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.892 0.537
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.844 0.500
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.830 0.500
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.828 0.537
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.828 0.537
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.828 0.537
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.828 0.512
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.823 0.512
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.822 0.500
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART12G00580.1 TCP 15 94

Links

Other TCP family TFs
Other Oryza barthii TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OGLUM12G00790 Oryza glumaepatula OGLUM12G00790 I 0.961
ORUFI12G00880 Oryza rufipogon ORUFI12G00880 I 0.955
BGIOSGA034630 Oryza indica BGIOSGA034630 I 0.940
ONIVA11G00470 Oryza nivara ONIVA11G00470 I 0.940
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.930
OPUNC12G17090 Oryza punctata OPUNC12G17090 I 0.918
PCF8 Oryza indica BGIOSGA037799 I 0.918
ONIVA12G17870 Oryza nivara ONIVA12G17870 I 0.918
ORGLA12G0161900 Oryza glaberrima ORGLA12G0161900 I 0.918
OGLUM12G20570 Oryza glumaepatula OGLUM12G20570 I 0.918
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.918
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.914
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.914
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.913
OMERI12G13760 Oryza meridionalis OMERI12G13760 I 0.913
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.911
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.911
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.911
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.911
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.910
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.910
Si022811m.g Setaria italica Si022811m.g I 0.909
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.909
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.909
Pavir.Ca02949 Panicum virgatum Pavir.Ca02949 I 0.909
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.907
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.904
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.903
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.903
LPERR12G15920 Leersia perrieri LPERR12G15920 I 0.903
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.903
Bo1g019520 Brassica oleracea Bo1g019520 I 0.899
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.898
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.898
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.898
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.898
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.898
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.897
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.897
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.897
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.897
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.896
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.893
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.893
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.893
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.893
29693.m001968 Ricinus communis 29693.m001968 I 0.893
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.893
TCP2 Arabidopsis thaliana AT4G18390 D 0.892
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.892
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.892
OBART02G32460 Oryza barthii OBART02G32460 I 0.892
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.892
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.892
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.891
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.890
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.890
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.889
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.889
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.889
OMERI02G31110 Oryza meridionalis OMERI02G31110 I 0.888
TCM_029442 Theobroma cacao TCM_029442 I 0.887
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.887
PCF6 Oryza indica BGIOSGA013684 I 0.887
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.887
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.887
PK16724.1 Cannabis sativa PK16724.1 I 0.887
Ca_00482 Cicer arietinum Ca_00482 I 0.887
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.887
Pm010440 Prunus mume Pm010440 I 0.887
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.886
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.886
Bra012600 Brassica rapa Bra012600 I 0.886
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.886
PCF6 Oryza sativa OS03G0785800 I 0.886
Bo7g105960 Brassica oleracea Bo7g105960 I 0.886
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.885
MDP0000287069 Malus domestica MDP0000287069 I 0.885
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.885
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.884
mgf024988m Mimulus guttatus mgf024988m I 0.883
Si019114m.g Setaria italica Si019114m.g I 0.883
OMERI04G02350 Oryza meridionalis OMERI04G02350 N 0.883
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.882
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.882
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.882
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.882
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.882
ORUFI07G02160 Oryza rufipogon ORUFI07G02160 N 0.881
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.881
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.881
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.881
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.880
Cla023702 Citrullus lanatus Cla023702 I 0.879
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.878
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.878
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.878
Cucsa.111880 Cucumis sativus Cucsa.111880 I 0.877
MDP0000927314 Malus domestica MDP0000927314 I 0.877
Cla019865 Citrullus lanatus Cla019865 I 0.877
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.876
Si002496m.g Setaria italica Si002496m.g I 0.876
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.876
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.876
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.875
Ca_05033 Cicer arietinum Ca_05033 I 0.875
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.875
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.875
GRMZM2G089361 Zea mays GRMZM2G089361 I 0.874
Si036075m.g Setaria italica Si036075m.g I 0.874
Sb01g006020 Sorghum bicolor Sb01g006020 I 0.874
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.873
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.872
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.872
mgf021685m Mimulus guttatus mgf021685m I 0.872
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.871
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.871
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.870
GRMZM2G115516 Zea mays GRMZM2G115516 I 0.870
Si004564m.g Setaria italica Si004564m.g I 0.869
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.868
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.868
Si022833m.g Setaria italica Si022833m.g I 0.867
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.866
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.865
gene30370-v1.0-hybrid Fragaria vesca gene30370-v1.0-hybrid I 0.865
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.865
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.865
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.865
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.864
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.864
Bo1g129830 Brassica oleracea Bo1g129830 I 0.863
Bo3g147760 Brassica oleracea Bo3g147760 I 0.862
Bra010789 Brassica rapa Bra010789 I 0.862
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.861
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.861
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.859
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.859
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.859
TCP10 Arabidopsis thaliana AT2G31070 I 0.858
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.858
Carubv10011113m.g Capsella rubella Carubv10011113m.g I 0.856
mgf016959m Mimulus guttatus mgf016959m I 0.855
Cla016530 Citrullus lanatus Cla016530 I 0.854
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.854
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.852
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.852
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.852
F775_18470 Aegilops tauschii F775_18470 I 0.852
Bra021586 Brassica rapa Bra021586 I 0.850
ORUFI12G21090 Oryza rufipogon ORUFI12G21090 I 0.849
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.849
BRADI1G06460 Brachypodium distachyon BRADI1G06460 I 0.848
Pavir.Ia00505 Panicum virgatum Pavir.Ia00505 I 0.847
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.846
Si029871m.g Setaria italica Si029871m.g I 0.846
Solyc10g018710.1 Solanum lycopersicum Solyc10g018710.1 I 0.846
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.846
PK10344.1 Cannabis sativa PK10344.1 D 0.844
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.843
Bo5g127500 Brassica oleracea Bo5g127500 I 0.843
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.842
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.841
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.841
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.841
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.840
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.840
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.839
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.839
OBART05G22490 Oryza barthii OBART05G22490 I 0.839
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.838
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.838
AMTR_s00133p00053750 Amborella trichopoda AMTR_s00133p00053750 I 0.837
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.836
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.836
Ca_12866 Cicer arietinum Ca_12866 I 0.835
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.835
F775_07590 Aegilops tauschii F775_07590 I 0.835
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.835
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.834
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.834
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.834
Solyc10g008780.1 Solanum lycopersicum Solyc10g008780.1 I 0.833
PGSC0003DMG400026626 Solanum tuberosum PGSC0003DMG400026626 I 0.833
PK17676.1 Cannabis sativa PK17676.1 I 0.833
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.833
fgenesh1_pg.scaffold_332000019 Physcomitrella patens fgenesh1_pg.scaffold_332000019 I 0.833
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.832
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.832
MLOC_12004 Hordeum vulgare MLOC_12004 I 0.832
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.832
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.831
MDP0000442611 Malus domestica MDP0000442611 I 0.831
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.831
Ca_02473 Cicer arietinum Ca_02473 I 0.831
Pm029788 Prunus mume Pm029788 I 0.831
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.831
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.830
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.830
OS01G0755500 Oryza sativa OS01G0755500 I 0.830
GRMZM2G015037 Zea mays GRMZM2G015037 I 0.830
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.829
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.829
TCP3 Arabidopsis thaliana AT1G53230 D 0.828
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.828
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.828
Ca_13216 Cicer arietinum Ca_13216 I 0.828
Solyc05g032780.1 Solanum lycopersicum Solyc05g032780.1 I 0.827
GLYMA19G03786 Glycine max GLYMA19G03786 I 0.827
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.827
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.827
GLYMA12G33640 Glycine max GLYMA12G33640 I 0.827
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.827
Traes_2DL_01D9C842D Triticum aestivum Traes_2DL_01D9C842D I 0.827
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.826
Carubv10023502m.g Capsella rubella Carubv10023502m.g I 0.826
MDP0000130524 Malus domestica MDP0000130524 I 0.826
PK12847.1 Cannabis sativa PK12847.1 I 0.826
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.826
MDP0000617746 Malus domestica MDP0000617746 I 0.826
mgf007729m Mimulus guttatus mgf007729m I 0.826
MDP0000199422 Malus domestica MDP0000199422 I 0.826
MDP0000253526 Malus domestica MDP0000253526 I 0.826
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.826
MDP0000373350 Malus domestica MDP0000373350 I 0.826
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.825
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.825
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.825
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.825
Thhalv10016870m.g Eutrema salsugineum Thhalv10016870m.g I 0.825
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.825
Bra027284 Brassica rapa Bra027284 I 0.825
Ca_11295 Cicer arietinum Ca_11295 I 0.825
30138.m003959 Ricinus communis 30138.m003959 I 0.825
TCM_031706 Theobroma cacao TCM_031706 I 0.825
Bo3g066540 Brassica oleracea Bo3g066540 I 0.825
Cagra.2527s0006 Capsella grandiflora Cagra.2527s0006 I 0.824
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.824
Carubv10026656m.g Capsella rubella Carubv10026656m.g I 0.823
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.823
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.823
TCP4 Arabidopsis thaliana AT3G15030 D 0.823
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I 0.823
Cla013734 Citrullus lanatus Cla013734 I 0.823
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.823
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I 0.822
Bo2g161240 Brassica oleracea Bo2g161240 I 0.822
Bra029344 Brassica rapa Bra029344 I 0.822
TCP5 Arabidopsis thaliana AT5G60970 D 0.822
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.822
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.822
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I 0.822