CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm024934
(
Prunus mume
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Pm024934
T344564_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.842
0.300
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.842
0.300
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.841
0.315
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.837
0.315
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.833
0.308
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.830
0.323
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.830
0.323
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.830
0.323
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.830
0.323
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm024934
TCP
92
225
TSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHNSGSSMSVPSQLRSSYYSPNFSVHQNQRRSLFQGIGLSSSDSSSTLLNFQTNSMHASMLQAKQELRDTVSLDLSETASGEGSMGGRKRRPPEQDLNQM
Links
Other
TCP
family TFs
Other
Prunus mume
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy