CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb03562
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.Eb03562
T356759_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY21
M02553_2.00
Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN
PBM
Weirauch et al.(2014)
pTH7422
0.808
0.467
WRKY21
M07389_2.00
Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a
0.808
0.467
WRKY21
M07390_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_col
0.808
0.467
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.808
0.450
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb03562.1.p
WRKY
126
187
YDGYQWRKYGQKRITKTHYPRCYYRCSFHRERGCRATKQVQQCSGGDQPQYLVIYFYDHTCD
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
136 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy