CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDR3
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YBL005W
T388329_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PDR3
M00918_2.00
Saccharomyces cerevisiae
NBCCGCGGRNN
NNYCCGCGGVN
PBM
Gordan et al.(2011)
Pdr3
(Direct)
(Direct)
PDR3
M08438_2.00
Saccharomyces cerevisiae
TCCGCGGA
TCCGCGGA
ChIP-chip
Mathelier et al.(2014)
MA0353.1
(Direct)
(Direct)
PDR3
M08642_2.00
Saccharomyces cerevisiae
NVCGGA
TCCGBN
Misc
DeBoer et al.(2011)
YBL005W_1387
(Direct)
(Direct)
PDR3
M08643_2.00
Saccharomyces cerevisiae
WCHGCGGN
NCCGCDGW
Misc
DeBoer et al.(2011)
YBL005W_2062
(Direct)
(Direct)
PDR3
M11475_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$PDR3_Q2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00918_2.00
Zinc cluster
13
51
TACVNCRKRKIKCTGKYPCTNCISYDCTCVFLKKHLPQK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YBL005W
Zinc cluster
13
51
TACVNCRKRKIKCTGKYPCTNCISYDCTCVFLKKHLPQK
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
976_YHR166C
Saccharomyces paradoxus
976_YHR166C
I
0.682
SKUD_189302
Saccharomyces kudriavzevii
SKUD_189302
I
0.678
1301_YBL005W
Saccharomyces mikatae
1301_YBL005W
I
0.667
1365_YBL005W
Saccharomyces bayanus
1365_YBL005W
I
0.547