CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig526.3
(
Saccharomyces castellii
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
Scas_Contig526.3
T390681_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YLR278C
M00099_2.00
Saccharomyces cerevisiae
NNNCGGVVNN
NNBBCCGNNN
PBM
Badis et al.(2008)
YLR278C_2147
0.645
0.865
YLR278C
M00926_2.00
Saccharomyces cerevisiae
NBCGGAGTTN
NAACTCCGVN
PBM
Gordan et al.(2011)
Ylr278c
0.645
0.865
YLR278C
M07525_2.00
Saccharomyces cerevisiae
NCGGAGWW
WWCTCCGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0430.1
0.645
0.865
YLR278C
M08683_2.00
Saccharomyces cerevisiae
NCGGAGWW
WWCTCCGN
Misc
DeBoer et al.(2011)
YLR278C_589
0.645
0.865
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig526.3
Zinc cluster
39
75
RSCLLCRRRKQRCDHKMPSCTACLKAAVKCVQPARYS
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces castellii
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NCAS_0F00370
Naumovozyma castellii
NCAS_0F00370
I
0.683
CAGL0G09757g
Candida glabrata
CAGL0G09757g
I
0.680
KAFR_0A04940
Kazachstania africana
KAFR_0A04940
I
0.680
SAKL0A08074g
Lachancea kluyveri
SAKL0A08074g
I
0.648
YLR278C
Saccharomyces cerevisiae
YLR278C
D
0.645
15796_YLR278C
Saccharomyces paradoxus
15796_YLR278C
I
0.645
16783_Multiple
Saccharomyces bayanus
16783_Multiple
I
0.645
23508_YLR278C
Saccharomyces mikatae
23508_YLR278C
I
0.645
SU7_2306
Saccharomyces arboricola
SU7_2306
I
0.645
TBLA_0E01110
Tetrapisispora blattae
TBLA_0E01110
I
0.642
KAFR_0G02450
Kazachstania africana
KAFR_0G02450
I
0.637
TBLA_0A09760
Tetrapisispora blattae
TBLA_0A09760
I
0.637
NDAI_0D02730
Naumovozyma dairenensis
NDAI_0D02730
I
0.592
KNAG_0M00970
Kazachstania naganishii
KNAG_0M00970
I
0.592
ZYRO0D14432g
Zygosaccharomyces rouxii
ZYRO0D14432g
I
0.575
TPHA_0K01100
Tetrapisispora phaffii
TPHA_0K01100
I
0.574
ZBAI_09347
Zygosaccharomyces bailii
ZBAI_09347
I
0.574
ZBAI_03663
Zygosaccharomyces bailii
ZBAI_03663
I
0.574
LALA0_S10e04918g
Lachancea lanzarotensis
LALA0_S10e04918g
I
0.574
Kpol_1009p5
Vanderwaltozyma polyspora
Kpol_1009p5
N
0.566
Kpol_345p3
Vanderwaltozyma polyspora
Kpol_345p3
I
0.564
KLTH0G15180g
Kluyveromyces thermotolerans
KLTH0G15180g
I
0.554
KLTH0G15180g
Lachancea thermotolerans
KLTH0G15180g
I
0.554
TPHA_0F02630
Tetrapisispora phaffii
TPHA_0F02630
I
0.547
AGOS_AGR280C
Ashbya gossypii
AGOS_AGR280C
I
0.545
KNAG_0F03040
Kazachstania naganishii
KNAG_0F03040
I
0.545
AACERI_AaceriAGR280C
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAGR280C
I
0.545
Ecym_3112
Eremothecium cymbalariae
Ecym_3112
I
0.545